Query= MSMg01no308_b05.b1 MSMg01no308_b05.b1 CHROMAT_FILE:
MSMg01no308_b05.b1 PHD_FILE: MSMg01no308_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:18 2005
(318 letters)
>mm_chr17_19863359_19864078
Length = 720
Score = 360 bits (186), Expect = e-104
Identities = 284/318 (89%), Gaps = 8/318 (2%)
Strand = Plus / Minus
Query: 5 gaattcttttataaatacaagtatcatgaaccttcctttccctcagttttttctaacaac 64
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 519 gaattcttttataaatacaagtatcatgcacgttactttccctcagttttttctaacaac 460
Query: 65 tccttctgctctctatctcttacttttacatttttattgccactttg---ttcattcatt 121
|||||||||||||||||||| |||||||||| ||||||| || |||| |||||||| |
Sbjct: 459 tccttctgctctctatctctaacttttacatatttattgtca-tttgtttttcattcagt 401
Query: 122 agagccagtgtatatacaattgggaatgactttactaggaaaaaaggtagactttcaagc 181
||||||| ||||| | || |||||||| ||| | | |||||| ||||||| ||||||||
Sbjct: 400 agagccaatgtatgtgtaactgggaatggcttcagtgggaaaataggtagaatttcaagc 341
Query: 182 cctacc-tttataaagaacagtactgtagcttgtt-agctactcaacaactttcaataaa 239
|||||| ||| |||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 340 cctaccattt-taaagaacagaactgtagctt-ttcagctactcaacaactttcaataaa 283
Query: 240 ttccttaataatcttcttgactatcatttaaattttaatacatatgcctttattctcttt 299
|||||||| ||| || || |||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 282 ttccttaaaaatattttttactaccatttaaattttaatacatatgccttttttctcttt 223
Query: 300 atacacaatatttttctg 317
|||||||| |||||||||
Sbjct: 222 atacacaacatttttctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 720
Length adjustment: 9
Effective length of query: 309
Effective length of database: 711
Effective search space: 219699
Effective search space used: 219699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_b05.g1 MSMg01no308_b05.g1 CHROMAT_FILE:
MSMg01no308_b05.g1 PHD_FILE: MSMg01no308_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:18 2005
(292 letters)
>mm_chr17_19645038_19645729
Length = 692
Score = 557 bits (288), Expect = e-163
Identities = 291/292 (99%)
Strand = Plus / Plus
Query: 1 tcaaaaatcatatgtctcttaaaagttttaaaagtattcacttgagtatataatatttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaaatcatatgtctcttaaaagttttaaaagtattcacttgagtatataatatttat 260
Query: 61 acattagaatatgtcatttatcttatttgtcttattaacatcctatttatcaattctttt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 acattagaatatgtcatttatcttatttatcttattaacatcctatttatcaattctttt 320
Query: 121 cttttgaaatatattacttcatttatatttatatctgtctgcatttatttaaaattaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttgaaatatattacttcatttatatttatatctgtctgcatttatttaaaattaata 380
Query: 181 tttgctaatactttgttattttgtttctgatatcaaagaactttattaatcattcaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgctaatactttgttattttgtttctgatatcaaagaactttattaatcattcaagta 440
Query: 241 aaaaatgaagttaatttcaaaacacatgcatccattcacaatatagcaacat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaatgaagttaatttcaaaacacatgcatccattcacaatatagcaacat 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
