Query= MSMg01no308_i14.b1 MSMg01no308_i14.b1 CHROMAT_FILE:
MSMg01no308_i14.b1 PHD_FILE: MSMg01no308_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:52 2005
(459 letters)
>mm_chr17_71860452_71861310
Length = 859
Score = 772 bits (399), Expect = 0.0
Identities = 435/451 (96%), Gaps = 11/451 (2%)
Strand = Plus / Minus
Query: 15 actcaag-gtggttagctaccactcatgtgggtgctagggatctaatgcagatcctgtga 73
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 762 actcaagattggttagctaccactcatgtgggtgctagggatctaatgcaggtcctgtga 703
Query: 74 agaagagccagtgttctcaaccctgagccatctctcccgccccgatagcagcatcttaac 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agaagagccagtgttctcaaccctgagccatctctcccgccccgatagcagcatcttaac 643
Query: 134 tttatcttgtgttttattagtggagcatccagattgtcctgcacggtaaccagatattaa 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tttatcttgtgttttattagtggagcatccagattgtcctgcacggtaaccagatattaa 583
Query: 194 ataattgagcttctacattgtctttggtttttcctattctaaactgtttgaagtcactca 253
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 582 ataattgagcttctacattgtctt-ggtttttcctattctaaactgtttgaagtcactca 524
Query: 254 ttaaattattaagttataatagtaatactatagttatttatctagttcttttgacttcct 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttaaattattaagttataatagtaatactatagttatttatctagttcttttgacttcct 464
Query: 314 ctaatataagtgtaaataatattgctttctttaccccac---ca--atgcttcttggaga 368
||||||||||||||||||||||||||||||||| | || ||||||||||| ||
Sbjct: 463 ctaatataagtgtaaataatattgctttcttta----aaatacagaatgcttcttggtga 408
Query: 369 aaataactaattgaatatgttctttcaagaaccgtctgatgtcattgaagaaactgaaag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaataactaattgaatatgttctttcaagaaccgtctgatgtcattgaagaaactgaaag 348
Query: 429 catccttacaagcagatgttcaaaactataa 459
| |||||||||||||||||||||||||||||
Sbjct: 347 cgtccttacaagcagatgttcaaaactataa 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_i14.g1 MSMg01no308_i14.g1 CHROMAT_FILE:
MSMg01no308_i14.g1 PHD_FILE: MSMg01no308_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:53 2005
(287 letters)
>mm_chr17_71688355_71689045
Length = 691
Score = 482 bits (249), Expect = e-140
Identities = 276/287 (96%), Gaps = 4/287 (1%)
Strand = Plus / Plus
Query: 1 actttgtctgttacagttttgaggaaaacagcctccctccctcc----ttgtgctaggcc 56
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 actttgtctgttacagttttgaggaaaacagcctccctccctccctccttgtgctaggcc 260
Query: 57 ttcagtcttacctggcctctcttccccagataaccctctaattttgcttctgtggtggcg 116
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ttcagtcttacctggcctctcttccccagataaccctctaattttgcttctgcggtggcg 320
Query: 117 ccatgttttgcacagctgtgtctgatcatcacagccatctgctgggatcactgtgcacag 176
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 321 ccatgttttgcacagctgtgtctgatcatcacagcggtctgctgggatcactgtgcatag 380
Query: 177 ctccctcccacatccaggtatgaggtctttgtgaacattcatattgcggaacataatgaa 236
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ctccctcccacatccaggaatgaggtttttgtgaacattcatattgcggaacataatgaa 440
Query: 237 cttatggtttgtttctcctagggacatccctgggattggaactgatg 283
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttatggtttgtttctcctagggacatccctgggattggaactgatg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 691
Length adjustment: 9
Effective length of query: 278
Effective length of database: 682
Effective search space: 189596
Effective search space used: 189596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
