BAC Information

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BAC

Clone NameMSMg01-308J05
Chromosome17 (Build37)
Map Location 92,843,636 - 92,843,927
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043741, LOC100043742, EG640442, LOC627395
Downstream geneLOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308J05.T7 (MSMg01no308_j05.b1)MSMg01-308J05.TJ (MSMg01no308_j05.g1)
ACCAG432619AG432620
length733735
length of high quality
(start - end)
320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no308_j05.b1 PHD_FILE: MSMg01no308_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:55 2005CHROMAT_FILE: MSMg01no308_j05.g1 PHD_FILE: MSMg01no308_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAACTGAGGAATATCAAATGGCTGAGAAGCACCTAAAAAATGTT
CAGCATCCTTAATCATCATGGAAATGAGTGTCAAGACAACCCTGAGATTC
TACCTCACACCAGTCAGAACGGCTAAGATCAAAAACTCAGGTGACAGCAG
ATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTGCATTGTTGGTGGA
ATTGCAAGCTTGTACAACCACTCTGGAAATCCATTTGGTTGTTCCTCAGA
AAATTGGACATAGTTCTACTGGAATATCCAGCAATACCACTCCTTGGCAT
ATAACCAGAAGATGTTCTTTTTGTCATCCCCACACATGCTCCACTATGTT
CATAACAGCCTTATTTATCCCACCCAGAAGCTAGAAAGAACACAGATGTC
CCTCAACAGAGGAATGGATACAGAAAACCTGGTACATTTACACAATGGAG
TGTTACTCAGCTATTAAAAAGAATGAATTTTTGAAATTCTTAGACAAGTG
AATGGATTTGGAGAATATCATCTTTTTTTTTTTTTTTTTTTTTTTTGGGT
TTTCGAGACAGGGTTTCTCTGTATAGCCCCGGCTATCCTGGAACTCACTT
TCTAGACCAGGCTGGCCTCTAACTCAGAAATCTGCCTGGCCGGTCCGGAA
TATCATTTTGATTGAGGTAACCCAATAATAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCCCTTTAATTGATAAAGGG
ATTGTTAAAGGATGAAATGCTCATTAGAAAGGAGGAGTAAGTTTACTATA
AAACACTTAGTGTAAAGGTACAGTTGCAGTAAGATATTTTTGGTGACAGG
AAAGATGGCACTTGAAGGAAAAGAAGTGTATGAAAGAGGAGAAACTAGGC
ATTCTGAGAATCAAAATCAGGAAAAGGACCCAGAGATTCTGAGTACATTC
TTAGCATTAACTTGTATGACTTGTAATTCTGTACCTGGTATATTATTTTC
ATGAACTCTGGAAAGCTTATTTATTTACCCCCTCCCCCTGGAGTGAATTA
TACTTTGATTTGTACTGCTTATTAACTTATTTAAAAACTGAATATGTCGG
TCGTGGGTTACATTCCCTCATCTCTTGCCACTCTCTATATCTCTCCTTCT
CTACAGCCATACTGTCTCTCCTTTACCTCAGAGAAGGTCAGGCCTCCTAT
TGGTATCAAGCCACATCGGAATATCAAGATGCAATACAATTTAGTGTGGC
CGTACCTATTTAGCCTAAACAAGGTAGCCCAGTTGCAGGGAATTGGTCCA
AATGAAGGCTACAAAGACACATGAAAATCAAACTGTATATCTGTTCAATA
TGTGCGGTGAGCCTAGTTCCATCCCATGCATGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_j05.g1 MSMg01no308_j05.g1 CHROMAT_FILE:
MSMg01no308_j05.g1 PHD_FILE: MSMg01no308_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:56 2005
         (292 letters)



>mm_chr17_92843436_92844127
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggccctttaattgataaagggattgttaaaggatgaaatgctcattagaaaggagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggccctttaattgataaagggattgttaaaggatgaaatgctcattagaaaggagga 260

                                                                       
Query: 61  gtaagtttactataaaacacttagtgtaaaggtacagttgcagtaagatatttttggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagtttactataaaacacttagtgtaaaggtacagttgcagtaagatatttttggtga 320

                                                                       
Query: 121 caggaaagatggcacttgaaggaaaagaagtgtatgaaagaggagaaactaggcattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaaagatggcacttgaaggaaaagaagtgtatgaaagaggagaaactaggcattctg 380

                                                                       
Query: 181 agaatcaaaatcaggaaaaggacccagagattctgagtacattcttagcattaacttgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatcaaaatcaggaaaaggacccagagattctgagtacattcttagcattaacttgta 440

                                                               
Query: 241 tgacttgtaattctgtacctggtatattattttcatgaactctggaaagctt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacttgtaattctgtacctggtatattattttcatgaactctggaaagctt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)