Query= MSMg01no309_d08.b1 MSMg01no309_d08.b1 CHROMAT_FILE:
MSMg01no309_d08.b1 PHD_FILE: MSMg01no309_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:44 2005
(277 letters)
>mm_chr17_75572799_75573479
Length = 681
Score = 464 bits (240), Expect = e-135
Identities = 261/270 (96%), Gaps = 6/270 (2%)
Strand = Plus / Plus
Query: 9 ttttttcatagctgtctataaatagaaggaaatagttaatttacgtgtgtgcactccaga 68
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 209 ttttttcatagctgtctataaatagaaggaaat-gttaatttatgtgtgtgcactccaga 267
Query: 69 gaaagacataaccagcatgcggttccctccagtgactatgaagggagagctgggacggga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaaagacataaccagcatgcggttccctccagtgactatgaagggagagctgggacggga 327
Query: 129 aagaagggtcaaca----gg-cactggagcttagctacctgtgtggcaaggagaacttgc 183
||||||||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct: 328 gagaagggtcaacatgttggtcactggagcttagttacctgtgtggcaaggagaacttgc 387
Query: 184 acaaactcagagtagaaatctcgcaggatattccttcttggaagattttccagtccctgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acaaactcagagtagaaatctcgcaggatattccttcttggaagattttccagtccctgg 447
Query: 244 gcatttaccccatgaggtatgaagaacata 273
||||||||||||||||||||||||||||||
Sbjct: 448 gcatttaccccatgaggtatgaagaacata 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 681
Length adjustment: 9
Effective length of query: 268
Effective length of database: 672
Effective search space: 180096
Effective search space used: 180096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no309_d08.g1 MSMg01no309_d08.g1 CHROMAT_FILE:
MSMg01no309_d08.g1 PHD_FILE: MSMg01no309_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:44 2005
(665 letters)
>mm_chr17_75653659_75654723
Length = 1065
Score = 1255 bits (649), Expect = 0.0
Identities = 661/665 (99%)
Strand = Plus / Minus
Query: 1 actttgttgaaggaaataatgtaactctagttattaatcactttaattttaaatgtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 actttgttgaaggaaataatgtaactctagttattaatcactttaattttaaatgtgctt 806
Query: 61 tgtaaacagagaggactggagactgcgagaacaatgtggaaagcacacgtaattacatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtaaacagagaggactggagactgcgagaacaatgtggaaagcacacgtaattacatgc 746
Query: 121 ttaatgggttccttttgaatttctgttggggataacaaaatcaaagagcttcaaggctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaatgggttccttttgaatttctgttggggataacaaaatcaaagagcttcaaggctct 686
Query: 181 aggaaacctaagtgtatatatgtaatttgaggaagttctatttcattttgccaactaata 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 aggaaacctaagtgtatatatgtaattcgaggaagttctatttcattttgccaactaata 626
Query: 241 atgtcacaaagggagggaaattaagccttgctctcaatagcaattacagaagattatgcc 300
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 625 atgtcacaaagggagggaaattaagctttgctctcaatagcaattacaggagattatgcc 566
Query: 301 gaatgaaatcatattgtttcatgagtcaaacttctctgtagtgtaatttagcagtgcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatgaaatcatattgtttcatgagtcaaacttctctgtagtgtaatttagcagtgcctt 506
Query: 361 cctgaggcaccacaaaatagaatgttctgtgatacttcaatccagaatccttgccagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgaggcaccacaaaatagaatgttctgtgatacttcaatccagaatccttgccagaaa 446
Query: 421 gcataatgctgctttgcagacttcctccagagaccgacatgagccaggatctggtgttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcataatgctgctttgcagacttcctccagagaccgacatgagccaggatctggtgttac 386
Query: 481 taacgaaccaccatgagattctctcagcagggaccacacttgctaaagatcacccagcca 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taacgaaccaccatgagattccctcagcagggaccacacttgctaaagatcacccagcca 326
Query: 541 taccaagcagaggagactacaagacccacaagcatcttctggagaaatttccagtctttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taccaagcagaggagactacaagacccacaagcatcttctggagaaatttccagtctttt 266
Query: 601 aaaataacaacttgcaaagttttacctctaactacctcttctccccagacaggatctttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaataacaacttgcaaagttttacctctaactacctcttctccccagacaggatctttg 206
Query: 661 aatat 665
|||||
Sbjct: 205 aatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
