BAC Information

Click to search

BAC

Clone NameMSMg01-311K19
Chromosome17 (Build37)
Map Location 87,650,925 - 87,801,653
singlet/doubletdoublet
Overlap geneMcfd2, Ttc7, 1700011E24Rik
Upstream genePrkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5
Downstream geneCalm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311K19.T7 (MSMg01no311_k19.b1)MSMg01-311K19.TJ (MSMg01no311_k19.g1)
ACCAG434109AG434110
length727746
length of high quality
(start - end)		320 (47 - 366)248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no311_k19.b1 PHD_FILE: MSMg01no311_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:35 2005CHROMAT_FILE: MSMg01no311_k19.g1 PHD_FILE: MSMg01no311_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,801,338 - 87,801,653)(87,650,925 - 87,651,172)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGAATACTTTCTACAGCACGTTTGAATCCATTTCTCTAACATT
GCTAGACACATTTTATTTCTTGACCCCGTATCCCAGTGTCGTCCTCCTTT
CCCTGTTCCACACTAGCTGTCCCGATTGCAGGCGCTGTGCACCTTAACCT
ATTCCTCCTTGATAAGTCTTTTGCTTTCTGTCACATGCATTTCCAGTCAA
CTTCTAGAACTGTTAGGGAAAGGTTTACAAAGCCCAAGAGACCACGTGCT
CCAGAAATGCGTAACAGTGTTCAAATGCTTTCACTCTTAAATAAAATGAA
CCCACAAATTTAAATTCTTTTTTCACGACCACCCCAACGCCTTAGTGGAT
ATTCTATGCCCTTCACGGAACCCACACTCACACACACACACACACACACA
CACACACACACACACACACACATTTGATGCACAGTTTTTAAAATGTGTTA
TTTTTTTTCCAGTTTTATTGTTATGTTTATGGACGTTTTGCCTGAACACA
TCTGCATGTCCCGTGTGCGCAGCACTGTAAATGTCACGGGATCACCTATC
ACTGTTATTGACCCACCGCTCGCAATTGCCTTGTGTGTGAAGTTATTAAA
TACCAGGGTCTTCTTATTATTATCCAGTGTTCTAATACCCTGATTCTTGT
ACCCATCCCCCTAACTGTTTCTTTTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATTAGCTGGACACTTTGGGGGCCA
GGAGTAGCTTAGTCCTTAGTTTGAACTCCCAGCCCCCATGTAAAAAGTGG
GCACATCCCTGGACACCTTTAGCCCCATGCTTGGAAGGTAGAACACAGGT
TGGCCGGTCTGTGAGTTCCCGGTTCAGTGAGAGACTCTAGGAAGGTCTCA
AAGTGTCTCCCCATACACTTAAGGTGGGGGGATTTTTGTTGCCTTGTGAG
AAAACAGATGCTTCCAGCCTATCTTCTTGTGGCTGCAACTGAAAAAATGT
ATTTTCTCCAGTTTTCATTGTTTGCCCCCCCCCCCCCCCAGGNAGGNGAG
GGGNAGAATGGAGGTTTTCCCCCCCCCCAAAAAAAAAAAAAAGGGGGGGG
GGGGGGGGGGGNNANTGNGGAAACCTAGTGNNTTGGAATCTCCATAAAAC
CTAGATGACGCCTTATTCATATATCCTGTGTTTCCCTCTGCAGCCGTCTC
ACCTTCCAGATCCTGTGCTTTTCCCCGCCATCCCCCTATACCACTTCCGG
CCTGGCTTACCTCCTCTAATTCTTTTTCTACACCCCTCCTTTCACAAAAT
CCCTCGCTCACACCTACGCTCCCCTTCTATTAATTACTTTCCTCCCCGCG
TTTTTTTTTACCCTCCCTTATCCACCTGCCTCTCCTATTTCTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_k19.b1 MSMg01no311_k19.b1 CHROMAT_FILE:
MSMg01no311_k19.b1 PHD_FILE: MSMg01no311_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:35 2005
         (320 letters)



>mm_chr17_87801134_87801853
          Length = 720

 Score =  534 bits (276), Expect = e-156
 Identities = 306/316 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaatactttctacagcacgtttgaatccatttctctaacattgctagacaca 64
           |||||||||||||| || |||||| ||||||||||  |||||||||| ||||||||||||
Sbjct: 520 gaattcatgaatacattgtacagcgcgtttgaatctgtttctctaacgttgctagacaca 461

                                                                       
Query: 65  ttttatttcttgaccccgtatcccagtgtcgtcctcctttccctgttccacactagctgt 124
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttttatttcttgacattgtatcccagtgtcgtcctcctttccctgttccacactagctgt 401

                                                                       
Query: 125 cccgattgcaggcgctgtgcaccttaacctattcctccttgataagtcttttgctttctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 400 cccgattgcaggcgctgtgcaccttaacctattcctccttgataagtcttttgttttctg 341

                                                                       
Query: 185 tcacatgcatttccagtcaacttctagaactgttagggaaaggtttacaaagcccaagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcacatgcatttccagtcaacttctagaactgttagggaaaggtttacaaagcccaagag 281

                                                                       
Query: 245 accacgtgctccagaaatgcgtaacagtgttcaaatgctttcactcttaaataaaatgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 accacgtgctccagaaatgcgtaacagtgttcaaatgctttcactcttaaataaaatgaa 221

                           
Query: 305 cccacaaatttaaatt 320
           ||||||||||||||||
Sbjct: 220 cccacaaatttaaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_k19.g1 MSMg01no311_k19.g1 CHROMAT_FILE:
MSMg01no311_k19.g1 PHD_FILE: MSMg01no311_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:35 2005
         (248 letters)



>mm_chr17_87650725_87651372
          Length = 648

 Score =  418 bits (216), Expect = e-121
 Identities = 240/248 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattagctggacactttgggggccaggagtagcttagtccttagtttgaactcccagcc 60
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattagctgaacactttgggagccaggagtagcttagtccttagtttgaactcccagcc 260

                                                                       
Query: 61  cccatgtaaaaagtgggcacatccctggacacctttagccccatgcttggaaggtagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cccatgtaaaaagtgggcacatccctggacacctttagccccatgcttggaagctagaac 320

                                                                       
Query: 121 acaggttggccggtctgtgagttcccggttcagtgagagactctaggaaggtctcaaagt 180
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggttggcccgtctgtgagttccaggttcagtgagagactctaggaaggtctcaaagt 380

                                                                       
Query: 181 gtctccccatacacttaaggtggggggatttttgttgccttgtgagaaaacagatgcttc 240
           |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctccctgtccacttaaggtggggggatttttgttgccttgtgagaaaacagatgcttc 440

                   
Query: 241 cagcctat 248
           ||||||||
Sbjct: 441 cagcctat 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |