Query= MSMg01no311_o03.b1 MSMg01no311_o03.b1 CHROMAT_FILE:
MSMg01no311_o03.b1 PHD_FILE: MSMg01no311_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:51 2005
(615 letters)
>mm_chr17_94099401_94100411
Length = 1011
Score = 1040 bits (538), Expect = 0.0
Identities = 593/616 (96%), Gaps = 14/616 (2%)
Strand = Plus / Minus
Query: 5 gaattcaccaaaatcagctgcttcagtcagtaataaatcatgggcatctgaataggagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 811 gaattcaccaaaatcagctgcttcagtcagtaataaatcatgggcatctgaatgggagga 752
Query: 65 accaagaacaactcatagagaactaaaaatcataccatctattgaaatggagagaaaatg 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 accaagaacagctcatagagaactaaaaatcataccatctattgaaatggagagaaaatg 692
Query: 125 ccaaagaactttgttataaaaatatatacacaataaaaaaaac-tattgtcaacaaccag 183
|||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 691 ccaaagaactttgttataaaaatatata-acaat--aaaaaacttattgtcaacaaccag 635
Query: 184 ataggaagcaaaggtactataaatcaactagcggacataggataaaaaaatacacatttt 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 634 ataggaagcaaaggtactataaatcaactagcggacatagga-aaaaaaatacacatttt 576
Query: 244 accttttgtttttttctctaagtgaaatgaattagcttatttgcaattataaatgtaatc 303
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 575 accttttg-ttttttctctaagtgaaattaattagcttatttgcaattataaatgtaatc 517
Query: 304 aggtttatagtttatgtattgtgcaaagcaacaagtctcctcactgagtgatctagaaga 363
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 516 agatttatagtttatgtattgtgcaaagcaacaagtctcctcactgagtgatctggaaga 457
Query: 364 attaattaacca----ccccgtggtgtgcattttaggaagtacttaactactgcctcaac 419
||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 attaatttatcagggt----gtggtgtgcattttaggaagtacttaactactgcctcaac 401
Query: 420 acaaacaggcagtatcttagaaaaccaagtcaagatttttaattcaaaatatatctggtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 400 acaaacaggcagtatcttagaaaaccaagtcaagatttttaattcaaaatatatctgctg 341
Query: 480 tattttcttggaaataaatttcatgtaaaatgcacagttttgctccagaaagattagata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tattttcttggaaataaatttcatgtaaaatgcacagttttgctccagaaagattagata 281
Query: 540 catatatagttggaaaattaatatagttaaatctacttcataatgtgatataatgaacat 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 280 catatatagttggaaaattaatatagttaaatctacttcataatgtggtataatgaacat 221
Query: 600 agtttttctttcttaa 615
||||||||||||||||
Sbjct: 220 agtttttctttcttaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1011
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1001
Effective search space: 605605
Effective search space used: 605605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_o03.g1 MSMg01no311_o03.g1 CHROMAT_FILE:
MSMg01no311_o03.g1 PHD_FILE: MSMg01no311_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:51 2005
(578 letters)
>mm_chr17_93947367_93948344
Length = 978
Score = 1048 bits (542), Expect = 0.0
Identities = 569/578 (98%)
Strand = Plus / Plus
Query: 1 aaaagtcttcaaggctcccttgcccaccagtcaggccagtaagaaaccctgtctcaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagtcttcaaggctcccttgcccaccagtcaggccagtaagaaaccctgtctcaaaag 260
Query: 61 tcaaggtgggtgactggtatggaaagaatgaaatatgatattcatcttggttggcttcca 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaggtgggtgaatggtatggaaagaatgaaatatgatattcatcttggttggcttcca 320
Query: 121 tatgcacacattaagacctgtacatacatacacataaaaaaaggtagagtacaataaaca 180
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tatgcacacatcaagacctgtacatacatacacatgaaaaaaggtagagtacaataaaca 380
Query: 181 tataagccagttacattgttgattattacatgttgcacatatagaacaatagctattcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataagccagttacattgttgattattacatgttgcacatatagaacaatagctattcag 440
Query: 241 aaacttggagtatttaaaagattttattatgaaattaaacccagtagctttattctgagt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacttggagtttttaaaagattttattatgaaattaaacccagtagctttattctgagt 500
Query: 301 ttcaatttagaaatatgcactgtatacttggggttggtatttgaaccctcttcaaaaatt 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 501 ttcaatttagaaatatgcactgtatacttggggttggtatttgaattctcttcaaaattt 560
Query: 361 ttgcttattttccaaggagattcatttatttttttaaattttattttatttttaattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgcttattttccaaggagattcatttatttttttaaattttattttatttttaattttt 620
Query: 421 ttatactccatattccattccttggcttccccatcctccctctgacttctccacatccca 480
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 621 ttatactccatattccattccttggcttccccatccaccctctgtcttctccacatccca 680
Query: 481 cacctcctccccaccctatcccgatgccacatggatgaccctactccccactccacttga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacctcctccccaccctatcccgatgccacatggatgaccctactccccactccacttga 740
Query: 541 cctctatactccctgggtcctcctgtctcttgagggtt 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctctatactccctgggtcctcctgtctcttgagggtt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
