BAC Information

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BAC

Clone NameMSMg01-312N22
Chromosome17 (Build37)
Map Location 25,186,278 - 25,358,461
singlet/doubletdoublet
Overlap geneIft140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965
Upstream geneKctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l
Downstream geneUnkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N22.T7 (MSMg01no312_n22.b1)MSMg01-312N22.TJ (MSMg01no312_n22.g1)
ACCAG434965AG434966
length725734
length of high quality
(start - end)
317 (45 - 361)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no312_n22.b1 PHD_FILE: MSMg01no312_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:03 2005CHROMAT_FILE: MSMg01no312_n22.g1 PHD_FILE: MSMg01no312_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,186,278 - 25,186,590)(25,358,171 - 25,358,461)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTTCTCTCCCTGAGTCCTGCCCGCCCTTCTCTGGAGCCTCCT
TTCATCCGATCGGTCTTCCTCTCATCTCTGCTGATGCCTTACCTCAACAA
TTCTTTCTTTTCTTTCCTACCAAGTGAGCCACTGGTCTACTGCTTCAGAA
TGTGGGTGCCCCTCAGACTGACAGAGCCCCAGTCCAGTCCAGAGCTACGA
ATCTGAGACTGACCTTTTCTTTATCCCCCTGCCCTCCTTATCTGATGAAA
TGTCTTCTGATTCTCCACTCTGCCTGATTTTCATGAGTTCTCTTTCAAGA
ACAGGCAATATTTTCTGCTCTGCTCCGCTCCCCGGCCAGACTCCTCATAG
TGCAAAGGGCACAGCTTACACCCCCTTAAAATAACACATCCTAAATTCTG
TGCGTGGCCTGTGGACACACCTCCAGTGCTGCTGGCGGTGGCATCTGTGA
GAGATCTGTGTTTCTTGTATGAGTGGGTCCTGTATAATCGGTTACAAGAG
CCACTGAGCCCCAGCACTGCCATCACACACAATCTGGATTTGCTGCGCTC
CTCTCAGGGTGGCCAGTGTGGCATGACTACCTCCCTCCATTCTACTTTCC
TCATAATTCTGTCTTTTGCATGTGATTATCCTGTCTTCATCTCCCAAATG
GCTGAGACTAATGATTTTGCGCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTAGTCAAGGCAGCTGTCAGTCTGAACCCCT
GAGACACTTTCATTGGCCCCGGTGCCCTGGTGCCGCTCCGGCTGGGGTCT
AACTTCCCCTCACCACTCTTCCGCTGCATGTCCTCCTTCCCATTGCTACT
GTCACGCTAGAAAACCAGAGGCAAAAGGCAGCTGGCAGGTCCTGAGGCCA
GCGGCATTCTTTTGGCATCAAGGAGCCTGAGGGAGTGGGCAAACGCCTGA
GGGTAACTGCAGGACAGTCTCTAGATTCTAATGTCCATCTGCAATAATCC
TGTGGACACTTTTTTTTATGACCTACACCACTTCCCTCCCTTCTCTCCCT
GAACCCGACAGCAGAAACAGGGAGGAGAAGAATCCCACTGCCTACATGGC
CACCTGCTGCAAGATAAGCCTGAATTCTAGAGGGTTCTTCAGAAGGTGAG
ACAGACCCACACAGAACCCCTGTGGAACTCAGGTCTTCCAGTGGAGGAGG
CCACACTAGCCACAGACTATGCAGTGATTTAGACAAGTGACCTGTGGTAG
AATGGGAGAGCAGAGTCTATCCTGAGTGAAATCAAGGCTGGAAAGGTACT
AAGGGCACATACTGCAACAACAAACTCCTCCTCAGGCTGCAGTGGTGCCA
AGTCCACAGTGCTTTCCCAGAAGCCTCAGCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n22.b1 MSMg01no312_n22.b1 CHROMAT_FILE:
MSMg01no312_n22.b1 PHD_FILE: MSMg01no312_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:03 2005
         (317 letters)



>mm_chr17_25186074_25186790
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctttctctccctgagtcctgcccgcccttctctggagcctcctttcatccg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctttctctccctgagtcctgcccgcccttctctggagcctcctttcatccg 264

                                                                       
Query: 65  atcggtcttcctctcatctctgctgatgccttacctcaacaattctttcttttctttcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcggtcttcctctcatctctgctgatgccttacctcaacaattctttcttttctttcct 324

                                                                       
Query: 125 accaagtgagccactggtctactgcttcagaatgtgggtgcccctcagactgacagagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accaagtgagccactggtctactgcttcagaatgtgggtgcccctcagactgacagagcc 384

                                                                       
Query: 185 ccagtccagtccagagctacgaatctgagactgaccttttctttatccccctgccctcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagtccagtccagagctacgaatctgagactgaccttttctttatccccctgccctcct 444

                                                                       
Query: 245 tatctgatgaaatgtcttctgattctccactctgcctgattttcatgagttctctttcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatctgatgaaatgtcttctgattctccactctgcctgattttcatgagttctctttcaa 504

                        
Query: 305 gaacaggcaatat 317
           |||||||||||||
Sbjct: 505 gaacaggcaatat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no312_n22.g1 MSMg01no312_n22.g1 CHROMAT_FILE:
MSMg01no312_n22.g1 PHD_FILE: MSMg01no312_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:03 2005
         (292 letters)



>mm_chr17_25357971_25358662
          Length = 692

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagtcaaggcagctgtcagtctgaacccctgagacactttcattggccccggtgccct 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||
Sbjct: 491 tgtagtcaaggcagctgtcagtctgaacccctgagacactttcagtggccgtggtgccct 432

                                                                       
Query: 61  ggtgccgctccggctggggtctaacttcccctcaccactcttccgctgcatgtcctcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggtgccgctccggctggggtctaacttcccctcaccactcttccgctgcatgtcctcctt 372

                                                                       
Query: 121 cccattgctactgtcacgctagaaaaccagaggcaaaaggcagctggcaggtcctgaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cccattgctactgtcacgctagaaaaccagaggcaaaaggcagctggcaggtcctgaggc 312

                                                                       
Query: 181 cagcggcattcttttggcatcaaggagcctgagggagtgggcaaacgcctgagggtaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagcggcattcttttggcatcaaggagcctgagggagtgggcaaacgcctgagggtaact 252

                                                              
Query: 241 gcaggacagtctctagattctaatgtccatctgcaataatcctgtggacac 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gcaggacagtctctagattctaatgtccatctgcaataatcctgtggacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)