BAC Information

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BAC

Clone NameMSMg01-313G02
Chromosome17 (Build37)
Map Location 69,815,339 - 69,816,043
singlet/doubletsinglet
Overlap geneA330050F15Rik
Upstream geneEG622645, Epb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik
Downstream geneLOC100043623, LOC668720, LOC673535, LOC100043630, LOC623112, LOC623143, Dlgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313G02.T7 (MSMg01no313_g02.b1)MSMg01-313G02.TJ (MSMg01no313_g02.g1)
ACCAG435325AG435326
length1,2591,270
length of high quality
(start - end)
730 (41 - 770)787 (78 - 864)
definitionCHROMAT_FILE: MSMg01no313_g02.b1 PHD_FILE: MSMg01no313_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:00 2005CHROMAT_FILE: MSMg01no313_g02.g1 PHD_FILE: MSMg01no313_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGTTANNNNNNNGCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCACACAGGGCAGGAAGCCTTATCTGATGCAGAGACCATGGA
GAGATGTTAGTTACTGGCTTGCTTCCCTTGGCTTGCTCAGCTTGCTTTCT
TATAGAACCCAAGACTAGCAGCCCAGGGATGGCACCACTCACAAGGGGTC
TGCCAGAGGCTCCCCACAGCTCAAGAATGTCATGGTCCTTTGGATGATTT
TTAAATGACCAATGATGATGGTGGTTGTGGTATGCGCACATGCGAATGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACTTGCGTGGGCG
ATAATTAAGAAAAAGCTTGCTACCAGGTAGGGTCCTGCTGCATAGTTGGC
ATACCTCACATGCCATGTTTATCATTTCCTGCGACTGTGGGAGCTTTGAG
AGTTCTTGATAGACTTACTGCCCATTCTCCAGCTATGAATCTCACAGGCT
GAATTGGTGGGCCATTTCTCCCATCTAGACTGGCTCTCAATGAAAGCCTT
GCATGATGATTCCCCAGGATCAGCAGAGCACACAGGCTGAAACATTTGAA
TACGGTGCTTTCAATTCTCCTTCCTTTGTACGAGCTTGTGTGAGCAAAAC
CACAGCTCTTACCTCTATAGGACAGGAAATAGTTTATTTAGGATCCAAAG
ATGAGAAAGAATGGCTGGGGTACATGCATTAGGTTGCCACAAAAATCTAT
GTCTCAGTGTGGTAACAACTTGATGAAGCTTTTATAGTAACGGAATGAAG
AAAGTCCTAAATTGAAGCACTTTCCAAATATATCCAAAGCGTTACACAGA
TGGCTTAGAGCAAAACAGGAGAATCTGGCCCAGAGGTCACAAATGATACT
TGATGCTGTGATTACCCTTTTGGTTGNAAAAATTCGGGTTTTTGTTTAAT
CCCGGAATTCCTAAAGGGTTTTATCGGTTCTCTCCGGATGTTTTTTTGCA
AAAACCAAATAGAAAGTCTCCTTCACTACTCAAAAAAACTCCCAGCAAAA
GGTAATTTGCCCCTCAAATTCTCAACTCTCCNTTCTTTCCCCCTACAAAA
CTCCCTCTATCATCACCTCTTCAGTATAACGAGAGCCCTCTCTTCCTTAA
ACTTTCCTATACATATTATGCGTTTTCTCCCCCTTTTCTTCCCCCCCTCT
CTTCTCTCTTTCTCCTCTATTTCCTTTTCCCTCTTCTTCTTTTTNTTCTA
TATCCTCTG
NNNCCCTTTNNNNNNNCAGAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAATCTGCAAAAGCCCGCA
GTGCCCAGGAACTTTTTATTTTTGTTTTGCACTGGTCGGTGGAGGAATAT
GAAACACAGTCTTTTTTTCTAGCTGCTTTAACAGGTAGGTCACTGGACTC
TTTTAAGGACTCAGCTTCTGTATTAGCACCCCTTTTGTTATCTCTTAAAC
ACATTGATCTTCAGCCAAAAGCTTTTTTTTTGTTGCCAGGTACTATCTAA
GTTTTCTAATTTTCCTGACTTTTGTGGCCAGCATTTCATTTCTCTTATCT
TTTTGTCTCACAGCACAGCTCTGATTCTGACTCTGATCTCTGTCTTTGTC
TTAACTTTCTGTTACCTTGGTCAGATTGTTGGGACTTTCTAGTCCCACAG
AGACGAGACCCCCATCAGAGCCTGGCAGTTAGACTCACAGGTGCTCCTTA
CCTTGGACAGAAGCCCCAAGTGGGCGGATGCCTCCCTCACTGGAACTTGG
AACAGACTCACTGCCAGCAGCTCAGGGTGGTGCCACCTTCTGAGAAGAGG
GAACTTTAGAGCAGAGACGGGAGTGCAGCTCTCACAGCTGGCTGCAACCG
GCACTTATCTTAAAGTGAAAGCAGTTTTTCTGTTAACAAGAGACGGGATG
GGAGGGACAGGGGAATGAGAAGCTGCCTGGGAACCTGCAGCGCTCTTGGC
CGGCTACTCGAACAGCCTCCTCTTCTTTTTATTTCAGCAGCCACAACATC
CAGGCCACTGACTTCTCAGGGACCACTCCTCATTTGCTCCGGATTTCCGA
GCTCATTTTTCCCTAGGCTCCAGGTCCATGGGCGGGACCACTGTGACCCG
CTGGCTGCTCTCTGGAGTTGGAGTGGGAGGCAGGNCAGCTGAGGATCTGA
AAGNAAGTGGTCAGCATAGGGATCTGACAGGGATCTTAGGCTTATTTCAA
AAGGCATACTTTAAAAAAAGCCCTCCGTCCTCCGTCCCAGGTCGGAACAC
CNAGAGACACAAAAGACCCCCCCCGAAACCCGTTTTTCGGGACCCCCCAT
AAAACCCCCGCCCCCCGAAAGGACAAACCACGCCGGACCAAACAGGGGTT
TTTTCTGGGTATTTCCAAAAAATTTTTGTGCTCTTATCCACACCCAAGGA
ACTGTTCCCTTGGAAAGGCCCCAAACCTTGAACGCCCTCAAACCAACCAA
AAAAACAATCTACCTCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_g02.b1 MSMg01no313_g02.b1 CHROMAT_FILE:
MSMg01no313_g02.b1 PHD_FILE: MSMg01no313_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:00 2005
         (730 letters)



>mm_chr17_69815114_69816243
          Length = 1130

 Score = 1013 bits (524), Expect = 0.0
 Identities = 663/726 (91%), Gaps = 30/726 (4%)
 Strand = Plus / Plus

                                                                       
Query: 14  ggaattcacacagggcaggaagccttatctgatgcagagaccatggagagatgttagtta 73
           |||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||
Sbjct: 226 ggaattcacacagggcaggaagcaggagctgatgcagagaccatggagagatgttagtta 285

                                                                       
Query: 74  ctggcttgcttcccttggcttgctcagcttgctttcttatagaacccaagactagcagcc 133
           |||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 286 ctggctggcttcccctagcttgctcagcttgctttcttatagaacccaagactaccagcc 345

                                                                       
Query: 134 cagggatggcaccactcacaaggggtctgccagaggctccccacagctcaagaatgtcat 193
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cagggatggcactgctcacaaggggtctgccagaggctccccacagctcaagaatgtcat 405

                                                                       
Query: 194 ggtcctttggatgatttttaaatgaccaatgatgatggtggttgtgg--------tatgc 245
           |||||||| |||||||||||||| |||||||||||||||||| ||||        |  ||
Sbjct: 406 ggtcctttcgatgatttttaaattaccaatgatgatggtggtggtggcggcggcgt--gc 463

                                                                       
Query: 246 gcacatgcga-atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttgcg 304
           ||||| || | |||||||||||||||||||||||                  ||||||||
Sbjct: 464 gcacacgc-acatgtgtgtgtgtgtgtgtgtgtg------------------cacttgcg 504

                                                                       
Query: 305 tgggcgataattaagaaaaagcttgctaccaggtagggtcctgctgcatagttggcatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| 
Sbjct: 505 tgggcgataattaagaaaaagcttgctaccaggtagggtcctgctgcatagctgacatag 564

                                                                       
Query: 365 ctcacatgccatgtttatcatttcctgcgactgtgggagctttgagagttcttgatagac 424
           |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 565 ctcacatgccgtgtttatcatttcctgctactgtgggagctttgagggttcttgatagac 624

                                                                       
Query: 425 ttactgcccattctccagctatgaatctcacaggctgaattggtgggccatttctcccat 484
           ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| |
Sbjct: 625 ttactgcccattctccagctatgaatctcacaggctgacctggtggtccatttctcccct 684

                                                                       
Query: 485 ctagactggctctcaatgaaagccttgcatgatgattccccaggatcagcagagcacaca 544
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 685 ctagactgcctctcaatgaaagccttgcatgatgattccccagcatcagcagagcacact 744

                                                                       
Query: 545 ggctgaaacatttgaatacggtgctttcaattctccttcctttgtacgagcttgtgtgag 604
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggttgaaacatttgaatagggtgctttcaattctccttcctttgtacgagcttgtgtgag 804

                                                                       
Query: 605 caaaaccacagctcttacctctataggacaggaaatagtttatttaggatccaaagatga 664
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 805 caaaaccacagctcttacctctacaggacaggaaatagtttattttggatccaaagatga 864

                                                                       
Query: 665 gaaagaatggctggggtacatgcattaggttgccacaaaaatctatgtctcagtgtggta 724
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaaagaatggctggagtacatgaattaggttgccacaaaaatctatgtctcagtgtggta 924

                 
Query: 725 acaact 730
           ||||||
Sbjct: 925 acaact 930


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space:   806400
Effective search space used:   806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)