BAC Information

Click to search

BAC

Clone NameMSMg01-313I23
Chromosome17 (Build37)
Map Location 39,984,923 - 39,985,283
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313I23.T7 (MSMg01no313_i23.b1)MSMg01-313I23.TJ (MSMg01no313_i23.g1)
ACCAG435451AG435452
length1,2261,242
length of high quality
(start - end)
397 (54 - 450)378 (72 - 449)
definitionCHROMAT_FILE: MSMg01no313_i23.b1 PHD_FILE: MSMg01no313_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:23 2005CHROMAT_FILE: MSMg01no313_i23.g1 PHD_FILE: MSMg01no313_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNGGACAGNNNNNNNNCCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTATTCCCCATGAACGAGGCATTCCCAGTAAGTGCGGGTC
ATAAGCTTGCGTTGATTAACTCCCTGCCCTTTGTACACACCGCCCGTCGC
TACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGG
TCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTAT
CTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAA
GGATCATTAACGGGAGACTGTGGAGGAGCGGCGGCGTGGCCCGCTCTCCC
CGTCTTGTGTGTGTCCTCGCCGGGAGGCGCGTGCGTCCCGGGTCCCGTCG
CCCGCGTGTGGAGCGAGGTGTCTGGAGTGAGGTGAGAGAAGGGGTGNNNN
NNNNNNNNNNNNNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTNN
NNCCCCGCATAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGACTTCAG
GCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACAGTTCAG
AGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACATGCAG
ATCCCTGCCCCCCACCCTACCCCTCCCCCAGCCCCACCCAAACATAGGGA
GAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGTGAGAGAATTTAGATAGC
TCGAAGAAATAAATAGCTGGAGACTTCATTCATTTACTTATTTTATTGAG
TATATGGTGAAAGAGGGAAAATGGCTCGAAAAGGAGGGAGGGCAGACTGT
CTTCCCATGCTGGGATCATTCATGCCTTAAGAAGGAATGGAGGAGGGTGT
TTTTTTTTTTTCCCCCCCCCGAGNNNNGACTGCTCCTCTGAAAAAAAGGG
GGGGGNNTCCCNGCNNCCNNNTGGTGGGTGNNNNNCNCCNCCCNNNNCCC
CCNNNNCNCCCCCTCTCCCTCTCCCCCTTCCCTTCCTTCTTCTTCTCTTC
CCCTTTTCTTTCTTTCCTTTCCCTCTCTTCTCTCTTCCCTCTTTTTTTCT
TTCCCTTTCTCTCTTCTTTTTCCTTTCTCTCTTTTCCTCCTCCTCTCTTT
TCCTTCTCTTTCTTCCTTTCTCTCCTTTCTCCTTCCTCTCTCCTCCTCTC
CTCNCTCTTTTTNTTCTTCCCTTTCTTTTTTTTTTCTTTCCCTTTCTTTT
TCCTTCTTCTTTTTTTTTCCTTCCTTTCTCTTCCTTCTCTCTTCTCTTCC
CTTTCCTTCCCTCTCTTTTCTCCTCTCTTTTTCCTTTCCCTCTCCTCCTC
TCCCTCTTCTCCTTCTCTCCCTCTTTTCTCCCCCTTCTTTCTTCTCCCTC
CCTTCCTTCCTCNTCCTTTCCTTTTCTTTTCTTCTTTCTCTTCTTTTTTT
CCTTTTTTTCNCTTTTTCCTTTTTCCTTTTCTTCTCCCCTCTCTTTCTTC
TTCCTCCCTTCCTTTCTTTCTTCCCCTCCTTTCTCTCCTTTTCCTTCTTC
TCTTCCCTCCCTCTNCCTTTTTTTCCCTCTCCCCTCCNCCCTCTCCTTTT
CCCCTTTTCCTCTTCTTCTTTTTCCTTTCTTCTCCTCCCNTCTTTTCTTT
CTTCNCTTCTCTTCTTTCCTCCCTTCTTCTTTCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_i23.b1 MSMg01no313_i23.b1 CHROMAT_FILE:
MSMg01no313_i23.b1 PHD_FILE: MSMg01no313_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:23 2005
         (397 letters)



>mm_chr17_39984718_39985514
          Length = 797

 Score =  603 bits (312), Expect = e-177
 Identities = 356/388 (91%), Gaps = 27/388 (6%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattattccccatgaacgaggcattcccagtaagtgcgggtcataagcttgcgttgatta 65
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 206 aattattccccatgaacgaggaattcccagtaagtgcgggccataagcttgcgttgatta 265

                                                                       
Query: 66  actccctgccctttgtacacaccgcccgtcgctactaccgattggatggtttagtgaggc 125
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 266 agtccctgccctttgtacacaccgcccgtcgctactaccgattggatggtttagtga--- 322

                                                                       
Query: 126 cctcggatcggccccgccggggtcggcccacggccctggcggagcgctgagaagacggtc 185
                                   ||||||||||||||| ||||||||||||||||||||
Sbjct: 323 ------------------------ggcccacggccctggtggagcgctgagaagacggtc 358

                                                                       
Query: 186 gaacttgactatctagaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaacttgactatctagaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcgg 418

                                                                       
Query: 246 aaggatcattaacgggagactgtggaggagcggcggcgtggcccgctctccccgtcttgt 305
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 419 aaggatcattaacgggagactgtggaggagcggcggcgtggctcgctctccccgtcttgt 478

                                                                       
Query: 306 gtgtgtcctcgccgggaggcgcgtgcgtcccgggtcccgtcgcccgcgtgtggagcgagg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgtgtcctcgccgggaggcgcgtgcgtcccgggtcccgtcgcccgcgtgtggagcgagg 538

                                       
Query: 366 tgtctggagtgaggtgagagaaggggtg 393
           ||||||||||||||||||||||||||||
Sbjct: 539 tgtctggagtgaggtgagagaaggggtg 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)