BAC Information

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BAC

Clone NameMSMg01-313L06
Chromosome17 (Build37)
Map Location 47,812,159 - 47,812,522
singlet/doubletsinglet
Overlap geneUsp49
Upstream geneKlhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463
Downstream gene1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313L06.T7 (MSMg01no313_l06.b1)MSMg01-313L06.TJ (MSMg01no313_l06.g1)
ACCAG435556AG435557
length1,2891,300
length of high quality
(start - end)
252 (501 - 752)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no313_l06.b1 PHD_FILE: MSMg01no313_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:42 2005CHROMAT_FILE: MSMg01no313_l06.g1 PHD_FILE: MSMg01no313_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGCGCACTGGGCGCCATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCTTTCTGTGTTCCTATGCCTCAGTGCCCTGATCTGTAAAATGGGAACT
GTCACAACAGTACTTAGCTACAGACCCCTCAGGAGAATTACATGCACTTT
GAGGAGGCTGAACAGGGCTGGGCCTGGCCCTTAGCAACTGTTACCTAAGT
ATTAGGTTATTGTTACAGAACACATGTTTGCCATTATGATGATGTGGACA
AAAGGTTTAGGCTCAGTGCTGGTTTATAAACCCGGGGATCCAGGATGAAT
CAATCAATAAGATCCTCAGATTCAGGCCAAATCAATTGATAAAATCCACA
GACTCACATGACCAATCCTTACAGCTAGGATAGCCCTGGAATAGAGGCAC
AGGGCATTGTGCTGGCTTTTGTTCCAGTGTCTCAGGACGGTCAGCCCTCC
TTTTTTTCTTGCCCCGCTCATGGCCTGTGCACGGTCACAAGAAAACTGGA
CTGTTGACTGCTGAATCTCGCTCCTGGGGAGCACACAGGGCTGGGTTCCT
GTGAGCCTCTGCTCAGAGCATCTTTATCAAGTGATCAATGCATACCCTTG
TTCTTTGTGTGTTTTTGCTTGTTTAAAATGTATTGTGGACTTGTTAGTAA
TGAACTCATGACCAGTAGTTGTATAATCTCCAGAAAAAAAGCTAATTTAT
TTTTTTCTGTAAGGCACATGCCGACAGCTAGGAATGGATGAGATAGGAGG
TCAGGTTAAAAAAACAAAAAACAACAACAAAAAAAAAAAAAACAAAAAAA
AAAAACCCAAATCACTTGCTACCCAAATTTTGATGGTGTCCAGTTAATCC
TTAGCAAGGACAGAACCTCTCCCTAAACACACCCATGCCTGCATGATCAG
CATGCATGTGCATGCACCCCTTGCCCACACTCCTGCCCAGATACGTGCAC
TTCCAACCCCTGAACAGGAAACCCGTTCCTGTACTCCCCCCCCTATTTTC
CCCCTATCCCCCCCCCCTAATAATAAAAAACATTTTAGAATTTATTTTTG
GGGAACAAACCTTTTCCCTCGTATGGCTCGCCCGTGCCCCCCTAGGATAA
AAAAAAGGGGCCCAACCCCTTTTTCCCGGAATTTTTCTTTTACCCACCCT
GGCGCGCGCGTTTATCAAAAGAGCCCCCCTCTCAAAATTTAATGTTTCTT
CAACTCACACCCTTCTCCACACCCAACTTTTTTTTCCATCTGGGCACCCT
ACCGTTCACTTCCTCTCCCCTCTTCATTATTCATTCACT
NNNCCCTGACTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAATCAAACAAGAACCATGAGACTACATTT
GTGAGCCTAGAGCCCGTGTAGCACCACGAAGCTAAGTACTACTGTTCTCA
CTGCCCCTGTTTCAGGAACCACTTTCACACATTTCCCCATAACTGAAGCC
AGTCAGAAGGAGTCAAAGGAGGCACCTTGTTTTGTTTTGGTTTTTTAAGA
CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCTCTGTAGACC
AGACTGGCCTCGAACTCAGAGACCTGCCTGCTTCTGCTCTCCAAGTGCTA
GGATAAAAGGCGTGCACCACCACTGCCTAGCAGAAGGCATTATTTTTAGT
ACTCTAAGAAGTATGTGCTTGTAGGTGTGGGTATTTGTAGGTATGTGTTT
TTTTTCCCCCCCCCACNTATCTCCACCCCCCCTTTAAAAAAAAGGGGGGA
TTGAATTCAAGACACCAGGCTCGTGTGGCAAACACCTTTCCCATTGAGCC
ATCTCATTGGTCCAGGTCTGTTTATAATAATGTAAACTCTGTACTAGCTA
TTTTAGAGGCTGCGAGGAAAAGATCTTTAAGTGGTTTAGAACACTTAGTG
CTGTCAGTGTCACTGTTGACTGGAGGGTCAAGCATGCTCCACCTGCACCC
CTGTCCTCTTCGTGCAGCACTCACTGTTACCCTGGTCACAAGCCAAAATT
CTCCCCTCCCAGGTCTCTGTCCCGGTGAACTTGCCTACTATCTCACTGAA
CAGTCTCTCTGTCCTGAATCAACGGTACAAACCCCTTTTCTTATGCCTTG
ATATCCTTCCTGCGAAATTCCAGGAACTCAATCCCAATCCGTCCTCAACG
GTATGTCTATTTATACTTCTCTGCTAAATCCTGTTACCCTTCCTTTAATA
TATTCCCTTTGATCATTTCATTCTTTTACCTTTCACCCTTCTCCATTTTC
TATTTTCTTCTTCTAACTCTTCTAATTCCTCCCACTTTCTCCCTCCTTTC
ATTTATTTCATCCTTTTTTCCTCTCTCACTTACTCTTCACATACTCCTCT
TCTCTTCTTTTCCTACTTTCCTACTTTATCCCATCTTCACCTACATCTTC
TCCCTCTCCTCTTTTCTCCTTCAATAAAACCTGTCCCGTCTCATTCTTCT
TATCTCTCTCCTACCTCTCCCTCTTCTTCTTATTCTTTTATCATCTGTNC
TACCTCTTTTTTTTCTCACTCATCTACATTCTCTACTCTTCTACCTCATC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_l06.g1 MSMg01no313_l06.g1 CHROMAT_FILE:
MSMg01no313_l06.g1 PHD_FILE: MSMg01no313_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:42 2005
         (377 letters)



>mm_chr17_47812159_47812935
          Length = 777

 Score =  665 bits (344), Expect = 0.0
 Identities = 359/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcaaacaagaaccatgagactacatttgtgagcctagagcccgtgtagcaccacgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||
Sbjct: 364 aaatcaaacaagaaccatgagactacatttgtgagcctagagcccgtgtagcattaggaa 305

                                                                       
Query: 61  gctaagtactactgttctcactgcccctgtttcaggaaccactttcacacatttccccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctaagtactactgttctcactgcccctgtttcaggaaccactttcacacatttccccat 245

                                                                       
Query: 121 aactgaagccagtcagaaggagtcaaaggaggcaccttgttttgttttggttttttaaga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 244 aactgaagccagtcagaaagagtcaaaggaggcaccttgttttgttttgtttttttaaga 185

                                                                       
Query: 181 cagggtttctctgtgtagccctggctgtcctggaactcgctctgtagaccagactggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cagggtttctctgtgtagccctggctgtcctggaactcgctctgtagaccagactggcct 125

                                                                       
Query: 241 cgaactcagagacctgcctgcttctgctctccaagtgctaggataaaaggcgtgcaccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cgaactcagagacctgcctgcttctgctctccaagtgctaggataaaaggcgtgcaccac 65

                                                                       
Query: 301 cactgcctagcagaaggcattatttttagtactctaagaagtatgtgcttgtaggtgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  cactgcctagcagaaggcattatttttagtactctaagaagtatgtgcttgtaggtgtgg 5

               
Query: 361 gtat 364
           ||||
Sbjct: 4   gtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)