Query= MSMg01no313_m20.b1 MSMg01no313_m20.b1 CHROMAT_FILE:
MSMg01no313_m20.b1 PHD_FILE: MSMg01no313_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:55 2005
(854 letters)
>mm_chr17_83470666_83471919
Length = 1254
Score = 1568 bits (811), Expect = 0.0
Identities = 834/843 (98%), Gaps = 3/843 (0%)
Strand = Plus / Plus
Query: 15 ggaattccaaaactcatcaaggacgatactaatgtctacttgtccaccctcgtctctata 74
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 212 ggaattccaaaactcatcaaggaagagactaatgtctacttgtccaccctcgtctctata 271
Query: 75 gggtgaaggtcccttaaccctggggtctgtaagatagcgctgctttcagtcagaattctt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gggtgaaggtcccttaaccctggggtctgtaagatagcgctgctttcagtcagaattctt 331
Query: 135 ctcatcaggcactgcttgacttccagtcagtgatgttctctcaatgtagccttgtcccat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctcatcaggcactgcttgacttccagtcagtgatgttctctcaatgtagccttgtcccat 391
Query: 195 atcagagctatggtcttaaagaagcaactcacctctgcatggaacaccccctcagcatcc 254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atcagagctacggtcttaaagaagcaactcacctctgcatggaacaccccctcagcatcc 451
Query: 255 agcacccccattgatgcctcttgtgtaactcgttaaaaccctatgaagaaagtgacacta 314
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 452 agcacccccattgatgcctcttgtgtaactcgttaaaaccctatgaaaaaagtgacacta 511
Query: 315 ttgtgtctattttgcagataaactcaggctcccaggagatacagtgctctcccgaactct 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttgtgtctattttgcagataaactcaggctcccaggagatacagtgctctcccgaactct 571
Query: 375 gcccccc---aacccctgcagttagtaaggggcagaattagaaccatctgcccagcccat 431
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 572 gcccccccccaacccctgcagttagtaaggggcagaactagaaccatctgcccagcccat 631
Query: 432 cttaggcaatttgatgtgcctggcccagttagaacacaaccaagcaagagtgcaccaaaa 491
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 632 cttaggcaatttgatgtgcctggcccagttagaacacaacgaagcaagagtgcaccaaaa 691
Query: 492 attgggggaggggggaagccttggagtcgggccaagctacgttccaccatcacttatatg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 attgggggaggggggaagccttggagtcgggccaagctacgttccaccatcacttatatg 751
Query: 552 taaaaaagtaatgaggcatacattgcctcactttcaggattctcagtgagttaatacacg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 taaaaaagtaatgaggcatacattgcctcactttcaggattctcagtgagttaatacacg 811
Query: 612 taccaggcttggcacaatgcctagcacacagtaaatgcttaataaatattagttatcttt 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 taccaggcttggcacaatgcctagcacacagtaaatgcttaataaatattagttatcttt 871
Query: 672 gctgtgttattatcaataatatttgtgaaagatccactagagagtctagcatatggcagg 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gctgtgttattatcaataatatttgtgaaagatccactagagagtctagcatatggcagg 931
Query: 732 cattcaaaaaaatgatagctgttaatcttgttgtttaagtcctggaaaagctacaggaat 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 cattcaaaaaaatgatagctgttaatcttgttgtttaagtcctggaaaagctacaggaat 991
Query: 792 tcagagcagggccagataacaaggtagtgaagacagaaagcaggctgcccaagcaactgt 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 tcagagcagggccagataacaaggtagtgaagacagaaagcaggctgcccaagcaactgt 1051
Query: 852 gca 854
|||
Sbjct: 1052 gca 1054
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 854
Length of database: 1254
Length adjustment: 10
Effective length of query: 844
Effective length of database: 1244
Effective search space: 1049936
Effective search space used: 1049936
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_m20.g1 MSMg01no313_m20.g1 CHROMAT_FILE:
MSMg01no313_m20.g1 PHD_FILE: MSMg01no313_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:55 2005
(377 letters)
>mm_chr17_83487410_83488186
Length = 777
Score = 530 bits (274), Expect = e-155
Identities = 361/414 (87%), Gaps = 41/414 (9%)
Strand = Plus / Minus
Query: 1 ccatctatgggattagctcagaataaggctgtatgtttctgaacttaaaaaaaacatggg 60
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 422 ccatctatgggaatagctcagaataaggttgtatgtttctgaacttaaaaaaaacatggg 363
Query: 61 agatacactgagacacagccatgccggaagctgcaagcggctgtggcacacacatggtag 120
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 362 agaaacactgagacacagccatgcgggaagctgcaagcggctgtggcacacacatggtag 303
Query: 121 gacttctacgttcatataggttcatagatttggaagaaacagcacactgggtgtctgagc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gactcctacgttcatataggttcatagatttggaagaaacagcacactgggtgtctgagc 243
Query: 181 cctctcttgctgaaaacatattaatgtggtgggctgggaagggtctggggagaggatggg 240
||||||||||||| ||||||||||| |||||||||||||||| |||| ||||||||||||
Sbjct: 242 cctctcttgctgagaacatattaatatggtgggctgggaaggatctgtggagaggatggg 183
Query: 241 aaggggctgtggaaaagcaggggaga-------------cgg------------------ 269
|||||||||||||||||| ||||||| |||
Sbjct: 182 aaggggctgtggaaaagctggggagaggcccaggaagggcgggggaggggacagggagag 123
Query: 270 --tggggcgaggccagggaggggctggga-aggg---gttgtggaggggccagggccggg 323
|||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct: 122 gttggggcgaggccagggaggggctggggcagggccag----ggaggggccagggccggg 67
Query: 324 ctggggagggaccaaggaggggctgaggagggggagggcggggcggggggttgt 377
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ctggggagggaccagggaggggctgaggagggggagggcggggcggggggttgt 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
