BAC Information

Click to search

BAC

Clone NameMSMg01-315C04
Chromosome17 (Build37)
Map Location 5,515,747 - 5,516,319
singlet/doubletsinglet
Overlap geneZdhhc14
Upstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312
Downstream gene3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315C04.T7 (MSMg01no315_c04.b1)MSMg01-315C04.TJ (MSMg01no315_c04.g1)
ACCAG435862AG435863
length744749
length of high quality
(start - end)
580 (72 - 651)529 (75 - 603)
definitionCHROMAT_FILE: MSMg01no315_c04.b1 PHD_FILE: MSMg01no315_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:31 2005CHROMAT_FILE: MSMg01no315_c04.g1 PHD_FILE: MSMg01no315_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTTGTTACTGACTGCGCATGCTTTGGTCACATGCCTTTTCAGA
AGGGCAGAGCTAGGTGCAGGTATGTCCGTGCCTAATGGGATGGACCCCTC
TTGCTGGCCCGTCCCTGCATGTCCTGTTTACTCCAGGTTGGTTAGAGTGG
AATGCAAGCTTAGAAGTAAATACACGTGGCCGGGTGGGCTGCCTGGGGAG
AGGGAAAGCCATCGGGAAGCAGGTGTTTTCAAGAGAGGTCTCCCATGCTC
TTGTTCACGGTGCTGTGCTGCTAAGAAATACAAACCTGTTTGCCCTCCAG
AAGTGGCACGGGCAGCGCGTAGAAGCAAGCACAAGAAGGCACAGGCTACG
CTACTGATGGCCAATCTCAACCCTTCACTGTGGAGCAGGAGGAGGTAACA
AGCTAGATCTTCACATGCACACCTCTTTCATCGTGAAGTGGGTTTTGCCA
TGCATGGTAAAGAGCAGGAAATCCCAGTGGCTTAACCATGATATAAACTT
ACATTGTGGGGCAGTCTGCAGGGCCTTCAGATACCCAACTTTGCCCTCTT
ATCTCTTCCTCCTCCCTAAGATGGGACCCTTGTTTTTATGTTCTTAGGTG
GTATCCAGAGCTCTGGCTATTGCATTCAGTTCTGGGTACCAGGACGAGCA
AGAAGGAGAGGCAGGGGAACACTCACAATGCTCTATAATGCTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGACTTTAAAGCCCAAATATTTCT
ATAACTAATACTTGAAGTGTAAAAGTAACTTGTATTTCCCAGATTAATTG
TCATCTTGGAGGCTTACTGCTGAACAGGCTCACCCTTTCTAGCTCTTTCT
AAACTCTGGCTGTCTGGTTCGACTAAGCTGTTCTGGTCCAAACTCATCTC
CAGGCTGACTGATTCAAACTGGTTTCTCTCAGCTGCTACTAAATTGCTCT
GCTTAGCAAAACTGCCTCTGGATTCCATGAATGGAAACTGTACTGACCTC
AACTGAACTCCTCTTAACTGGACGGCTCTGCTCTCAGCTGAACTCGACAG
GACTGTCTGAGCATCTCTCTCCCTCACTGCTCTTGTAAGCAGCCTCTTTC
CTGTCCTTTCTAGTGAGAGCAGGGTGTGTCCTCTCTCTGACTCATTCTTC
CAAAATCTCTTTCTAACTCATCACTTTGTCTGCCCCTCAGTTAGATATCA
CTGACATCACTTTCAAACACGGCAAACTCACTTCACCTTCATTGTTAGGG
ATTCAAGGTGGACACTAAGGGTGTGTCTGTATTCCAGCCAGCCAGAGGTG
TATCATTCCTACCAGATCATACAGACCTGGAAGATTTTTGGATGTGATCT
CTTTCCAGAGCAACCATGTTGCTGACTTAAAATCCCTCTATGGGAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_c04.b1 MSMg01no315_c04.b1 CHROMAT_FILE:
MSMg01no315_c04.b1 PHD_FILE: MSMg01no315_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:31 2005
         (580 letters)



>mm_chr17_5515540_5516519
          Length = 980

 Score = 1023 bits (529), Expect = 0.0
 Identities = 562/573 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   tttggtcacatgccttttcagaagggcagagctaggtgcaggtatgtccgtgcctaatgg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tttggtcacatgccttttcagaagggcagagctaggtgcaggtatgtccgtgcctaatgg 267

                                                                       
Query: 68  gatggacccctcttgctggcccgtccctgcatgtcctgtttactccaggttggttagagt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gatggacccctcttgctggcccgtccctgcatgtcctgtttactccaggttggttagagt 327

                                                                       
Query: 128 ggaatgcaagcttagaagtaaatacacgtggccgggtgggctgcctggggagagggaaag 187
           |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 328 ggaatgcaagtttagaagtaaatacacatggccgggtggactgcctggggagagggaaag 387

                                                                       
Query: 188 ccatcgggaagcaggtgttttcaagagaggtctcccatgctcttgttcacggtgctgtgc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccatcgggaagcaggtgttttcaagagaggtctcccatgctcttgttcacggtgctgtgc 447

                                                                       
Query: 248 tgctaagaaatacaaacctgtttgccctccagaagtggcacgggcagcgcgtagaagcaa 307
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 448 tgctaagaaatactaacctgtttgccctccagaagtggcacgggcagcgcatagaagcag 507

                                                                       
Query: 308 gcacaagaaggcacaggctacgctactgatggccaatctcaacccttcactgtggagcag 367
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 508 gcacaagaaggcacaggctacgctactgatggccaatctcaaggcttcactgtggagcag 567

                                                                       
Query: 368 gaggaggtaacaagctagatcttcacatgcacacctctttcatcgtgaagtgggttttgc 427
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 568 gaggaggtaacaagctagatctccacatgcacacctctttcattgtgaagtgggttttgc 627

                                                                       
Query: 428 catgcatggtaaagagcaggaaatcccagtggcttaaccatgatataaacttacattgtg 487
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 628 catgcatggtaaagagcaggaaatcccagtagcttaaccatgatataaacttacattgtg 687

                                                                       
Query: 488 gggcagtctgcagggccttcagatacccaactttgccctcttatctcttcctcctcccta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gggcagtctgcagggccttcagatacccaactttgccctcttatctcttcctcctcccta 747

                                            
Query: 548 agatgggacccttgtttttatgttcttaggtgg 580
           |||||||||||||||||||||||||||||||||
Sbjct: 748 agatgggacccttgtttttatgttcttaggtgg 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)