BAC Information

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BAC

Clone NameMSMg01-315E01
Chromosome17 (Build37)
Map Location 46,328,972 - 46,329,518
singlet/doubletsinglet
Overlap genePolh
Upstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2
Downstream geneXpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315E01.T7 (MSMg01no315_e01.b1)MSMg01-315E01.TJ (MSMg01no315_e01.g1)
ACCAG435948AG435949
length710709
length of high quality
(start - end)
572 (52 - 623)547 (76 - 622)
definitionCHROMAT_FILE: MSMg01no315_e01.b1 PHD_FILE: MSMg01no315_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:40 2005CHROMAT_FILE: MSMg01no315_e01.g1 PHD_FILE: MSMg01no315_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAG
CCGCGGAATTCTTGAATCCCCGTGGCAGTCTCGTCCATGTGAGCTGCCTG
GTCCTTCCATTCTCTGGGTCTCACCATTCAAAAGCAAACAAGGGCTGGCT
GTTAGGGTGTAGTCTCAGGCAAAAGAAAGCGTCTTTGAGATCTAAGACCA
TATACCAGGTTCGTTAGGGTGGCAGCGTGCTGAGCAGGTTGTAAGGATTG
GGCTCTGTGGGGTGGATATCCTGAACTTTTTTGTTTACCTCTCTGAGGTT
CTGTACAGGACGGTAGTCGTTCGTCCCTGGTTTCTTTACTGGGAGTAGGG
GGGTATTCCAAGGAGACTTGCAGGGGACTAGGATCCCTTGTTGGAGCAGT
CTGGTGATATGGAGGCGTATACCCTCCTGAGCTTCCTTGCTCATGGGGTA
CTGTCGGACCCCAATGGGAGTGGCCCCAGACTTAAGCTTGATCACCACCA
GGGGAGCTTGTCTTGCCATTCCCATTCCCCCCATTTCAGCCCAGGCTTGA
GGAATTTGAGTAAGCCAGTCCTGTATTCCCTCAGGAGGTTCCATTTTACT
CTGGTAAATCTGATACTCTTCCCCTAGATGTAAAGACAGCACTAGGGTCT
GAGGTGTCTCAGCACCCCAGGATAATTCTGGTCTGGAGGGGGCAAAAGTT
ATTCATGCCC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGATCATTCACAAATTCACAGTT
GTGAAATAGAATAAAATGTGATTACACAGCAAGGGAAATACAGACATGTT
GGTTTAAAGATGCAGTAATGAGATAGGTATAGGGCAGAGTACATGGGAGA
AGAAAAAGTCCAAACACCGTAGAGAAGATGGGTCAGACGAGCACGCAGAG
GAAACCTTGCCACCCTTCAGTGACTACTGCATCCCTCCACAGCTGCCATG
TCTGCTGCCAGCATCCTAACCATGGCAAGTGAGCAACACTTTCCCGCTCT
GTATGTTCCCCTTGGTGACCATGACCTGATCCCGCTGAATACACGCACAC
CTCCCTCTCTGACCCCAANCTCGGGTCTTTAGCGCCCGTCCTCCCTGCCA
CCTCCTGACAGAGCAACTCCTTTATGCTTATGACTGTGCAAACATTCTAA
CTCAACATAACTAAAATCAAGCACAGCTTCTTTCTCAAAGGGTCCCTCTC
CCAATGCCTTGTTTTTAATAAAAGCTTAGAATTTACCTAACATTAACTTT
ATTCTTTCATTTTCTACTGTGTAGTCAGCCAACAGAGCCCACTTCAAAAC
AGTTTCCTGTATCACTTCAACTCCCCTGCTTCACTTAAACTACCTTAACT
CTTTGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_e01.g1 MSMg01no315_e01.g1 CHROMAT_FILE:
MSMg01no315_e01.g1 PHD_FILE: MSMg01no315_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:40 2005
         (547 letters)



>mm_chr17_46328772_46329718
          Length = 947

 Score =  998 bits (516), Expect = 0.0
 Identities = 539/547 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgatcattcacaaattcacagttgtgaaatagaataaaatgtgattacacagcaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aatgatcattcacaaattcacagttgtgaaatagaataaaatgtgattacacagcaaagg 260

                                                                       
Query: 61  aaatacagacatgttggtttaaagatgcagtaatgagataggtatagggcagagtacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 261 aaatacagacatgttggtttaaagatgcagtaatgagataggtatagggcagaatacctg 320

                                                                       
Query: 121 ggagaagaaaaagtccaaacaccgtagagaagatgggtcagacgagcacgcagaggaaac 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaagaaaaagtccaaacaccatagagaagatgggtcagacgagcacgcagaggaaac 380

                                                                       
Query: 181 cttgccacccttcagtgactactgcatccctccacagctgccatgtctgctgccagcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgccacccttcagtgactactgcatccctccacagctgccatgtctgctgccagcatc 440

                                                                       
Query: 241 ctaaccatggcaagtgagcaacactttcccgctctgtatgttccccttggtgaccatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaccatggcaagtgagcaacactttcccgctctgtatgttccccttggtgaccatgac 500

                                                                       
Query: 301 ctgatcccgctgaatacacgcacacctccctctctgaccccaanctcgggtctttagcgc 360
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 501 ctgatcccgctgaatacacgcacacctccctctctgaccctaagctcgggtctttagcgc 560

                                                                       
Query: 361 ccgtcctccctgccacctcctgacagagcaactcctttatgcttatgactgtgcaaacat 420
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 ccatcctccctgccacctcctgacagagcaattcctttatgcttatgactgtgcaaacat 620

                                                                       
Query: 421 tctaactcaacataactaaaatcaagcacagcttctttctcaaagggtccctctcccaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctaactcaacataactaaaatcaagcacagcttctttctcaaagggtccctctcccaat 680

                                                                       
Query: 481 gccttgtttttaataaaagcttagaatttacctaacattaactttattctttcattttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccttgtttttaataaaagcttagaatttacctaacattaactttattctttcattttct 740

                  
Query: 541 actgtgt 547
           |||||||
Sbjct: 741 actgtgt 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)