Query= MSMg01no315_o04.b1 MSMg01no315_o04.b1 CHROMAT_FILE:
MSMg01no315_o04.b1 PHD_FILE: MSMg01no315_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:29 2005
(654 letters)
>mm_chr17_85502032_85503085
Length = 1054
Score = 752 bits (389), Expect = 0.0
Identities = 434/468 (92%), Gaps = 29/468 (6%)
Strand = Plus / Minus
Query: 216 aataagtattaaaaatgcattattagccatatagtgacatgttaattcaaccacagaaaa 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 aataagtattaaaaatgcattattagccatatagtgacatgttaattcaaccacagaaaa 995
Query: 276 atgaatgactttctgaaacatggtagaatttggacaattttctt---------------- 319
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 atgaatgactttctgaaacatggtagaatttggacaattttctttttaatgaaaagtgta 935
Query: 320 -------------gccagacgtaaaagcccacacactgcagtgccccctctctatgggat 366
|||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 934 ctaagtaaaaagagccagacgtaaaagcccacacactgcagtgttccatctctatgggat 875
Query: 367 gtctagaacagataagcccagaacaagcaagtcagaggctgccagagatcaggggaggga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gtctagaacagataagcccagaacaagcaagtcagaggctgccagagatcaggggaggga 815
Query: 427 ggctgctgacaggggtgtggcctcacttatctgattaatgatcaggctgcctaagggtga 486
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 814 ggctgctgacaggggtgtggcctcacttatctgattaatgatcaggctgcctgagggtga 755
Query: 487 cagcagcaaaccctggctacactaaggaagggcagaggactgcacgggaaccctgatttt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cagcagcaaaccctggctacactaaggaagggcagaggactgcacgggaaccctgatttt 695
Query: 547 accttatgattaacaaaaactttgcttttaaaaggcagaataaataaactacaaagtgaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 accttatgattaacaaaaactttgcttttaaaaggcagaataaataaactacaaagtgaa 635
Query: 607 atgtgccccanaagacttagaagaataaaaaaagcagaggctttcaga 654
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 634 atgtgccccaaaagacttagaagaataaaaaaagcagaggctttcaga 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_o04.g1 MSMg01no315_o04.g1 CHROMAT_FILE:
MSMg01no315_o04.g1 PHD_FILE: MSMg01no315_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:29 2005
(589 letters)
>mm_chr17_85336709_85337697
Length = 989
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%)
Strand = Plus / Plus
Query: 1 cctagtacatattcaaactttaaaagttgttcctcagatggatcttcgaaatgatttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctagtacatattcaaactttaaaagttgttcctcagatggatcttcgaaatgatttttc 260
Query: 61 cctctaatttagaatgtaattgacattcatgtctatctagacttatttactttacaaaag 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctaacttagaatgtaattgacattcatgtctatctagacttatttactttacaaaag 320
Query: 121 tcatttgttttaccctttttgcttttttgtaacacgatttttttccttttatttatttat 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tcatttgttttaccctttttgcttttttgtaacactatttttttccttttatttatttat 380
Query: 181 tttttgtttattctgagacaaattcctctgtgtagccctggctgtcctggaactcactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttgtttattctgagacaaattcctctgtgtagccctggctgtcctggaactcactct 440
Query: 241 gtagaccaagctggccttggactcagagatctgcctgcctctgcctcctgaatgctggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaccaagctggccttggactcagagatctgcctgcctctgcctcctgaatgctggaa 500
Query: 301 ttaaaggtgtgtaccactactgcttggctacattttttatgctatgcccttatctagagt 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttaaaggtgtgtaccactactgcttggctacattttttatgctatggccttatctagagt 560
Query: 361 gagcaacaccttgggatctataaagactgaaatatggctactacatataacttaatgagc 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcaacaccttgggatctaaaaagactgaaatatggctactacatataacttaatgagc 620
Query: 421 ttcattatgtttttttaatatgacacatatttataattaatattatttgtaatatttaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcattatgtttttttaatatgacacatatttataattaatattatttgtaatatttaac 680
Query: 481 attagttaattagttatatgttatatataatatagttaacattataagcaaatttgttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attagttaattagttatatgttatatataatatagttaacattataagcaaatttgttgc 740
Query: 541 agaatgacccacaatcttaggtcagtttgtttctgactagcttaaggtt 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaatgacccacaatcttaggtcagtttgtttctgactagcttaaggtt 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
