Query= MSMg01no316_g20.b1 MSMg01no316_g20.b1 CHROMAT_FILE:
MSMg01no316_g20.b1 PHD_FILE: MSMg01no316_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:10 2005
(627 letters)
>mm_chr17_78738973_78739999
Length = 1027
Score = 1021 bits (528), Expect = 0.0
Identities = 567/588 (96%), Gaps = 15/588 (2%)
Strand = Plus / Plus
Query: 45 acacacacacacacacacacacacacacacacacacacacacaccagctgttataacatc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acacacacacacacacacacacacacacacacacacacacacaccagctgttataacatc 304
Query: 105 catttcggtccaaacttgctaacctgcgaagttcccagaccccttctgtcttatcctttc 164
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 305 catttcggtccaaacttgctaacctgcgaagttcccagcccccttctgtcttatcctttc 364
Query: 165 ctttctgcctgtgtttctttctcttccgtgctttattgaaatagttccttatagtcgtgg 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 365 ctttctgcctgtgtttctttctcttccgtgctttattgaaatagttccttatagtcatgg 424
Query: 225 aatgtaatactttcttttccctattgcatgagttcagtatgtattcatctggaccgaaaa 284
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 425 aatgtaatactttcttttccctattgcaggagttcagtatgtattcatctggaccgaaaa 484
Query: 285 tctcccttatcttttcctattaaaacattctacagaaaatagtcctaataaccatttatg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctcccttatcttttcctattaaaacattctacagaaaatagtcctaataaccatttatg 544
Query: 345 cc-----cccccctcttggacattacacctagttccttttcatatcaggatttcttaaag 399
|| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 545 cctgtttc-----tcttggacattacacctagttccttttgatatcaggatttcttaaag 599
Query: 400 caggacctgaggagctggtgcagtgtgtagaatagagaacaccagcactgacacagaaaa 459
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 600 caggacctgaggagctggtgcagcgtgtagaatagagaacaccagcactgacacagaaaa 659
Query: 460 ctgagcattgcagcgcatacctgtgatcccagcactggaaggcaaggacaagaggattct 519
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctgagcattgcagtgcatacctgtgatcccagcactggaaggcaaggacaagaggattct 719
Query: 520 gggggcttatgagcaagccagcctatctgaccagtcattgagctcagggtttggtgaaag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gggggcttatgagcaagccagcctatctgaccagtcattgagctcagggtttggtgaaag 779
Query: 580 tccttgccaaaaaaaaaaaaaaaaaaagaacaaaaactggtaaagagc 627
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 780 tccttgccaaaaaaaaaaaaaa-----gaacaaaaactggtaaagagc 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_g20.g1 MSMg01no316_g20.g1 CHROMAT_FILE:
MSMg01no316_g20.g1 PHD_FILE: MSMg01no316_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:10 2005
(660 letters)
>mm_chr17_78914715_78915772
Length = 1058
Score = 1226 bits (634), Expect = 0.0
Identities = 653/660 (98%), Gaps = 2/660 (0%)
Strand = Plus / Minus
Query: 1 tgtaaggatcccctgccaattctcttgaaaatcttcaagaaggttgtattatctggccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tgtaaggatcccctgccaattctcttgaaaatcttcaagaaggttgtattatctggccag 799
Query: 61 tcaaatggccagaaaataacacctgccatttaattctcaagaagcattggaaaacattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tcaaatggccagaaaataacacctgccatttaattctcaagaagcattggaaaacattaa 739
Query: 121 tgaagaaaatatgtactagaaatggagctaaatgttttatataaattcgaagatcagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgaagaaaatatgtactagaaatggagctaaatgttttatataaattcgaagatcagaaa 679
Query: 181 aaaaaaaccacactgtaaaaaaaaattctctttgtcgtctcggaagcacagtagtgtttc 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaaaa--cacactgtaaaaaaaaattctctttgtcgtctcggaagcacagtagtgtttc 621
Query: 241 tgtgtttcaagattctggcggcagccttgactcgggacaggctgtgggtatccctgactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtgtttcaagattctggcggcagccttgactcgggacaggctgtgggtatccctgactt 561
Query: 301 cagttcatccctctcccttgacctggaggatggctggggattgccaccgagtcacatctg 360
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 560 cagttcatccctctcccttgacctggaggatggctggggattgttactgagtcacatctg 501
Query: 361 ttctatgtggatttgccattttcaggttgccatgtaacgtaatttttatggatgcttcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctatgtggatttgccattttcaggttgccatgtaacgtaatttttatggatgcttcca 441
Query: 421 tcaaacatcatatggtgcctgctttggagacttcccaggcagcctgaacgtttctactca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaaacatcatatggtgcctgctttggagacttcccaggcagcctgaacgtttctactca 381
Query: 481 tccctaaggatcccgggaaggcttacagaaaagtttctagctgattaaaaacaaattcta 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccctaaggaccccgggaaggcttacagaaaagtttctagctgattaaaaacaaattcta 321
Query: 541 cagccagtatccacaaatgtttgttttatggatgaggtaaccatggaaaatgcaataaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagccagtatccacaaatgtttgttttatggatgaggtaaccatggaaaatgcaataaac 261
Query: 601 aaaacagacatagttcttgctccgttgtgaacatgttactccaggcatgctgccgtggag 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaacagaaatagttcttgctccgttgtgaacatgttactccaggcatgctgccgtggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1058
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1048
Effective search space: 681200
Effective search space used: 681200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
