Query= MSMg01no317_a19.b1 MSMg01no317_a19.b1 CHROMAT_FILE:
MSMg01no317_a19.b1 PHD_FILE: MSMg01no317_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:58 2005
(648 letters)
>mm_chr17_49975779_49976825
Length = 1047
Score = 1125 bits (582), Expect = 0.0
Identities = 630/646 (97%), Gaps = 2/646 (0%)
Strand = Plus / Plus
Query: 3 ggaattctcagccagtcttgcgagaacagcggaagagacacatagggaaggaactttaat 62
||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctcagccagcca-gagagaacagcggaagagacacatagggaaggaactttaat 261
Query: 63 atgcaaaagaaatgcaagggaaagccaggctggagcttcatcacaatagacctggagaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgcaaaagaaatgcaagggaaagccaggctggagcttcatcacaatagacctggagaga 321
Query: 123 aagtagttgctgcaccagcctggggaactgagctcaggtcttcagagcttccatcagaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagtagttgctgcaccagcctggggaactgagctcaggtcttcagagcttccatcagaag 381
Query: 183 cctggcatggcaccttgcttctgtaagcctggcacagaggagggcagggacggggagacc 242
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 382 cctggcatggcaccttgcttctgtaagcctggcacggaggagggcagggacagggagacc 441
Query: 243 cctggagctcaccaggcagccagcctagccatacctgtgagcctcaggtcccgtaagaga 302
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctggagctccccaggcagccagcctagccatacctgtgagcctcaggtcccgtaagaga 501
Query: 303 caaccgtctcaaaagacaaggtggagagtgactaaagaagacaggtgacatagacttctg 362
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 502 caaccgtctcaaaagacaaggtggagagtgactgaagaagacaggtgacgtagacttctg 561
Query: 363 tcctctacgcgaatgctctgagttcctgcaaagaagctgtctacacaggctaactcactg 422
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 tcctctactcgcatgctctgagttcctgcaaaggagctgtctacacaggctaactcactg 621
Query: 423 attaaaacgccagtgatatggagaggttggagtgttgcaggaagagtaaccttcagccta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attaaaacgccagtgatatggagaggttggagtgttgcaggaagagtaaccttcagccta 681
Query: 483 acacgagccatccctcacacaactctgagccagagctgtcatcctaataagaaagataaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acacgagccatccctcacacaactctgagccagagctgtcatcctaataagaaagataaa 741
Query: 543 agcccatggaacgtattaactaagaacaaaaaagtattctccaccaaaggaagggctaag 602
| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 742 aacccatggaacgtattaactaagaacaaaaa-gaattctccaccaaaggaagggctaag 800
Query: 603 actgtcatgagagaacatctacctagctataacccacctctctgat 648
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 actgtcatgagagaacatctacctaactataacccacctctctgat 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_a19.g1 MSMg01no317_a19.g1 CHROMAT_FILE:
MSMg01no317_a19.g1 PHD_FILE: MSMg01no317_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:59 2005
(656 letters)
>mm_chr17_50142014_50143069
Length = 1056
Score = 1222 bits (632), Expect = 0.0
Identities = 650/656 (99%)
Strand = Plus / Minus
Query: 1 tgggctgagtgttcccttctggtttgtcagagaagttgcaggctgctacccgtagggtgg 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 856 tgggctgagtgttcccttctggtttgtcagagaagttgcaggctgctagcggtagggtgg 797
Query: 61 agacccagcctctggcaaagctgcagtgctagctaaggcactagatctcccttccttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agacccagcctctggcaaagctgcagtgctagctaaggcactagatctcccttccttgat 737
Query: 121 ctctgggctgaaggcagtcagaggcggttacaaaagagttaaggtgaacagaagggtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctctgggctgaaggcagtcagaggcggttacaaaagagttaaggtgaacagaagggtgga 677
Query: 181 ggtggagagaaccggcagtcacctttagtatttctatccaaggcacagcatggggtcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggtggagagaaccggcagtcacctttagtatttctatccaaggcacagcatggggtcctg 617
Query: 241 cctttttctgacacacagctctcaagctctctatttctctttccataggtgtgagtcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cctttttctgacacacagctctcaagctctctatttctctttccataggtgtgagtcaga 557
Query: 301 gttaattaccatgtccatcttgcagctagcgcctgatatcagtgcgcctgtaggggtgac 360
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 556 gttaattaccatgtccatcttgcagctagcgcctgatatcagtgtgtctgtaggggtgac 497
Query: 361 acagtagcctacatatttatcagctctccctgtaccaccttcatgtcacactggagggct 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 496 acagtagcctacatatttatcagctctccctataccaccttcatgtcacactggagggct 437
Query: 421 aaactcatggcctgtctttattctcctatgcagcctaccatgactaccaaagacagaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaactcatggcctgtctttattctcctatgcagcctaccatgactaccaaagacagaatt 377
Query: 481 ggaaggcaactctgttcttttggggactccctaatctgccactatatcctcacttaacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggaaggcaactctgttcttttggggactccctaatctgccactatatcctcacttaacca 317
Query: 541 aggcaccagctgccactgcctatcaagagcatgggaatttttagccaggaagtagggata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 316 aggcaccagctgccactgcctatcaagagcatgggaatttttagccaggaagtagagata 257
Query: 601 gccaggcagaattggttggtatctaagataacccttgacttaagagtgggaactct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gccaggcagaattggttggtatctaagataacccttgacttaagagtgggaactct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
