BAC Information

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BAC

Clone NameMSMg01-317G19
Chromosome17 (Build37)
Map Location 25,674,261 - 25,674,551
singlet/doubletsinglet
Overlap genenone
Upstream genePkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5
Downstream geneLOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317G19.T7 (MSMg01no317_g19.b1)MSMg01-317G19.TJ (MSMg01no317_g19.g1)
ACCAG437495AG437496
length717703
length of high quality
(start - end)		291 (123 - 413)---
definitionCHROMAT_FILE: MSMg01no317_g19.b1 PHD_FILE: MSMg01no317_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:26 2005CHROMAT_FILE: MSMg01no317_g19.g1 PHD_FILE: MSMg01no317_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGA
ATTCTCTCAGTAGCCGAAGATTGCTGACATACCTTGAAACCCCCAGCCAG
GGTCACATTGGGGTGAGGTCCACGAGAGTCTCAGACAGAGGCTGTAGGAG
GAAATTTGGGAACCCCCTGAACACCTGATGGTCTGGGAGGTATTCCAGGT
TTACATTTAGGGTGTGAGGGATACCAGGTCACACATGAGTGAAGCCAAAG
GAGGAAGAGGCCAGGCCCAGTTTCTGGCCACCACATGACCCTTGGCCAGC
CGCTCCCTGCTTCTGATGTTAACCTAAGGCTAACTGGGATCTCTCTCCCA
CATTGGGAATTTTTTCGTCTGGGTAGCCTCCTGCTGCCATAGTCACTGCT
CCTGGGAAGAGTCCCGACCACCCACAGTTTATCAGTTTGCACACCGGTAC
TGGTCTGGCTGCCACCTGCCACTTTGCCTGCTTTTAAATAGCAAGAAATC
AGTAAAGTCCTTCCCAGAACCACCCTGGATCAGTGTTCAAACTCATTCCT
ATGTGTAGACATGGGCTCAGCCAGGTCCCTGGAGGACACATCACTGGGTC
TTGTCTACACTGGCGTTGGGTAGCTACCTGGATGGGCATGGGGATAAGGG
ACGCCCAGCTTATCAAGCCACTCCCCAGCTCCAGGCCCTTGAACGGATAG
GAAAGCAGAGGGGAAGA

CCATGAAAGGGGAGGCCGGNGGNGCCCGTTCCGACCCGANNGGAANNANA
GATTTCCCGACCCGACNGNNNGAANCAGGANGGCNGCAAGCGAGCAACNG
GGNTTCCCCCCCACCACCGCCGCCGCAGCAAGCAAGGANGGGGGAAGGGA
CAGAAAAGCACCGGGCAAGACAGGGGAACACAGCGAAAGACCGGGGGAGC
AAGAACGCACACGGNAGACCGGGCGGGCNNNGAACNCTTATATCACCTGC
CACTGTCAACTGAGTGCTGGGATTAAAGGAGTAATCGCACAAACACAGAC
TTGTTTTGTCTTTGAAAANGGACCCCAGGACACGGGGCCAGAAAACNCCT
ATAGCCCCCCCCCCGCAGGGGACCAGATGGGAGNTCTGACCTTGGCACCC
CGGCACCCAACCAAAAAAAGAAAAAGAGAATGTCCCGCCATGAAGTGGAA
TGGACAGACCGCGCCGGAATGATGAAAGAGAACCCCGATGATCAGGAAAG
AAGGAAAAGCCGGCAGCAGCAAGAACCTGGGAAACATCCCTAACACCAAA
AAAAAAAAAGACCCCCGTGATGGGGAAGAACTCAAGAGACAGCATGAGAA
AAAAAGGAAATTAACAGAGAAAGGCAGCACCAGGCTTATATTTATTTTTC
AGCCGGCACCAGAAAAACAACCGAAAACACCACAGCAACACACATACAAA
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_g19.b1 MSMg01no317_g19.b1 CHROMAT_FILE:
MSMg01no317_g19.b1 PHD_FILE: MSMg01no317_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:26 2005
         (291 letters)



>mm_chr17_25674061_25674751
          Length = 691

 Score =  518 bits (268), Expect = e-151
 Identities = 285/296 (96%), Gaps = 10/296 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgagagtctcagacagaggctgtaggaggaaatttgggaaccccctgaacacctgatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgagagtctcagacagaggctgtaggaggaaatttgggaaccccctgaacacctgatggt 260

                                                                       
Query: 61  ctgggaggtattccaggtttacatttagggtgtgagggataccaggtcacacatgagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaggtattccaggtttacatttagggtgtgagggataccaggtcacacatgagtga 320

                                                                       
Query: 121 agccaaaggaggaagaggccaggcccagtttctggccaccacatgacccttggccagccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccaaaggaggaagaggccaggcccagtttctggccaccacatgacccttggccagccg 380

                                                                       
Query: 181 ctccctgcttctgatgttaacctaaggctaactgggatctctctcccacattgggaa--- 237
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   
Sbjct: 381 ctccctgcttctgatggtaacctaaggctaactgggatctctctcccacattgggaaaaa 440

                                                                   
Query: 238 --ttttttcgtctgggtagcctcctgctgccatagtcactgctcctgggaagagtc 291
             |     ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cat-----cgtctgggtagcctcctgctgccatagtcactgctcctgggaagagtc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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