BAC Information

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BAC

Clone NameMSMg01-320H12
Chromosome17 (Build37)
Map Location 61,480,508 - 61,480,801
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320H12.T7 (MSMg01no320_h12.b1)MSMg01-320H12.TJ (MSMg01no320_h12.g1)
ACCAG439692AG439693
length731668
length of high quality
(start - end)
294 (383 - 676)241 (65 - 305)
definitionCHROMAT_FILE: MSMg01no320_h12.b1 PHD_FILE: MSMg01no320_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:59 2005CHROMAT_FILE: MSMg01no320_h12.g1 PHD_FILE: MSMg01no320_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACATTTCCCCAGAGACACTGAAACTTATAGAGGAGAAAGTGG
GGAAAAGCCTCAAAGATTTGCCCCCCAAAAAAAAATTCCCTAACAGAACA
GCAATGGCTTGTGCTATAAGATCGAGAATTGACAAATGGGACATCATAAA
ATTGTAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGC
CACCAATAGATTGGGAAAGGATCTTTACCACTCCTAAATCAGATAGGGGA
TTAATATCCAATATATATAAAGAACTTAAGAAGATGGACTCTAGAAAATC
AAATAACCCTATTATTTATGGCATACCCCCCTTATACTTTTTAAACTCAC
ATCACTTTCATGATATTTGTGATTCTAAAAAGCATGTGAAACTTTCAGCT
TTCAACAATTTTGTCTTCCCTTTTTAAATGTAGGTCATCATATAAGACCC
ATGAAAACCACAAACTTTCCTTTGCAATGGCCCACTGAATTAACTACCCT
TCTTGCCCACTTGGTCTTGCTACCTGTTGATCCACAAATGACATATGTCA
GGAATAAGCATTTTGCTTACTTTTTGACCTCTTAGTCAATTTACACATTT
TCTCTAACACATCAAGATTTTTGTGAAGAATACCACATGATTACAATAGA
AGTGAGGAAACATTTCAAGGCTATGAATGTA
CTCCGCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGA
ATTTTTGCCCAACATCCTTCATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGG
TTCCTCATAAAATTGGACATAGTACTACCGGAGGATCCAGCAATTTTTTT
TTTGGGCCCCCCCTCCCCAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGAAGACTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGTCCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCCCAAAGGAACTCACAAAATATGTACTCCCTGATAAATGGATATTAGC
CCAAAACCTAGGATACCCCAGATATAAGATACAATTTCCTAAACACATTG
AACTCAAGAAAAATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_h12.b1 MSMg01no320_h12.b1 CHROMAT_FILE:
MSMg01no320_h12.b1 PHD_FILE: MSMg01no320_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:59 2005
         (294 letters)



>mm_chr17_61480308_61481001
          Length = 694

 Score =  532 bits (275), Expect = e-155
 Identities = 290/295 (98%), Gaps = 2/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatactttttaaactcacatcactttcatgatatttgtgattctaaaaagcatgtgaaac 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatacttttaaaactcacatcactttcatgatatttgtgattctaaaaagcatgtgaaac 260

                                                                       
Query: 61  tttcagctttcaacaattttgtcttccctttttaaatgtaggtcatcatataagacccat 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tttcagctttcaacaattttgtcttcccttgttaaatgtaggtcatcatataagacccat 320

                                                                       
Query: 121 gaaaaccacaaactttcctttgcaatggcccactgaattaactacccttcttgcccactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaaccacaaactttcctttgcaatggcccactgaattaactacccttcttgcccactt 380

                                                                       
Query: 181 ggtct-tgctacctgttgatccacaaatgacatatgtcaggaataagcattttgcttact 239
           ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ggtctct-ctacctgttgatccacaaatgacataagtcaggaataagcattttgcttact 439

                                                                  
Query: 240 ttttgacctcttagtcaatttacacattttctctaacacatcaagatttttgtga 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttgacctcttagtcaatttacacattttctctaacacatcaagatttttgtga 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)