BAC Information

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BAC

Clone NameMSMg01-321G12
Chromosome17 (Build37)
Map Location 26,526,873 - 26,527,179
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Downstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321G12.T7 (MSMg01no321_g12.b1)MSMg01-321G12.TJ (MSMg01no321_g12.g1)
ACCAG440384AG440385
length732744
length of high quality
(start - end)
311 (45 - 355)---
definitionCHROMAT_FILE: MSMg01no321_g12.b1 PHD_FILE: MSMg01no321_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:08 2005CHROMAT_FILE: MSMg01no321_g12.g1 PHD_FILE: MSMg01no321_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTTCCTTTAGCACCATACCTGCCTGGATTCTACCATGCTTCCT
GCCTTAATGATAATGGACTGAACCTCCGAACCTGTAAGTCAGCCCCAATG
AAATGTTCTTATAAGAGTTGCCATGGTCATGGTGTCTCTTCACAGCAATG
AAATCCTAAGACAGTTAGAGATTTGATAGGCTAGAAAACTCTTCACTAGG
TACCTACAGCACCCCTAGCTTCTACTGCCCTGGATTAAGATGACATAACT
AGATTCTGCTGAGAGATCTATTGGGTCCCATCCACAGAGCACAGCTATAC
AAGGCATTGCTCNGTGCCCNNGCGNACCATGAGGTGTGGAATAATTTGAG
AGCTCTCACTCCCCCCCTGAGAAAAAAAGAAGAAGATAGCTGTCAGAGAC
AGATGTATCAGAGGGTCCTGTTTCACACAAGCCTGGGCTGTACAGATGCA
CACAGGGGTAAGAGAAAAAACACTTTCCTGTCATCTTGTTTGGCAGGCTT
GCTGGTGCCACCCTAACAGTCCTGAGTCATCTCACTGGTGTCACTGATTC
TTGACCCTGAACACCCCTACTATAGTGGTACCGGTGGCAGAGTCGGCCCT
GTCGTTCTGTTTATGTTCCCGGAAGATCTCACCGGTCCCTTGTGACCACA
TAGGTACTCCTGGTCCTGGCTTTTTATTATAT
ATGCAGTGGTAGGCCTGGNGGCGCCGGTCGCACCTGAGGNGAANCAAGAA
TATCGCACCGGCCAGGAAGGGGGGGGAGGACACGACCGGACAGGGACTAA
ACAACCAAAAGGGAGGGAGGGAGGGAGAGAGAGAGAACAAACAACCACCC
ACAGACGGGGCNCCCAGGACCGGGCCCGCCNGGCAACGCACCCCCACACG
CCACAACCAGCCAGCAGATTTTTTGCCCTTCCCCAGTGTTGCCTCTGCCC
TCACGCCCTACCACGAGCCCAGCCCGGCTCTTTCGTGGTTTAAGACCACC
CCCAAGGGCGGACCCACCACTTTTTTTTCCCCCCCCCCCCCCCCCTTTTC
TTCTTCCCCCGCGCGGTTAGAGGGGCCCCCCCCCATATTATAATCCAAGT
TCTCCGCTTCGCTTCATCCCTTCCTCCCCGCCTCCTCCTTTTCCTCGCCC
CCCCATTCTTTTCCCATTACCCCTTACCCAAGCACCTTTACAGAGATTGC
GTCCATTTTCTTGACGTTATCCCCTTCTACCTGCCTCTTTTCTCCCTAAC
GTTCCCTTCCTTCCCCTTTCCCCCTATTTTTGCGTTCTTTTTTTTCCCTT
CCCTTTTTTTCCCCCCCTATTTCCGCACCCTCCTCTGTTTTTTTTCTTTT
TTTTTTTTCTTCCCCTTCCCCCCCCGCTTTACCTCCCTTTTCTTTCTTTT
CTTACTCCCCCACATTTTCATTGAATTACTCCTTTCCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_g12.b1 MSMg01no321_g12.b1 CHROMAT_FILE:
MSMg01no321_g12.b1 PHD_FILE: MSMg01no321_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:08 2005
         (311 letters)



>mm_chr17_26526508_26527218
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagttcctttagcaccatacctgcctggattctaccatgcttcctgccttaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaattctcagttcctttagcaccatacctgcctggattctaccatgcttcctgccttaat 613

                                                                       
Query: 65  gataatggactgaacctccgaacctgtaagtcagccccaatgaaatgttcttataagagt 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 612 gataatggactgaacctccgaacctgtaagccagccccaatgaaatgttcttataagagt 553

                                                                       
Query: 125 tgccatggtcatggtgtctcttcacagcaatgaaatcctaagacagttagagatttgata 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 552 tgccatggtcatggtatctcttcacagcaatgaaatcctaagacagttagaaatttgata 493

                                                                       
Query: 185 ggctagaaaactcttcactaggtacctacagcacccctagcttctactgccctggattaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggctagaaaactcttcactaggtacctacagcacccctagcttctactgccctggattaa 433

                                                                       
Query: 245 gatgacataactagattctgctgagagatctattgggtcccatccacagagcacagctat 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 432 gatgacataactagattctgctgagagatctactgggtcccatccacagagcacagctat 373

                  
Query: 305 acaaggc 311
           |||||||
Sbjct: 372 acaaggc 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)