Query= MSMg01no321_m17.b1 MSMg01no321_m17.b1 CHROMAT_FILE:
MSMg01no321_m17.b1 PHD_FILE: MSMg01no321_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:37 2005
(491 letters)
>mm_chr17_46069501_46070391
Length = 891
Score = 868 bits (449), Expect = 0.0
Identities = 477/491 (97%), Gaps = 8/491 (1%)
Strand = Plus / Plus
Query: 1 agcagcagcagcagcacgtgaccctcacaggcaatcaggaactaggtcatcccaccctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agcagcagcagcagcacgtgaccctcacaggcaatcaggaactaggtcatctcaccctcc 260
Query: 61 cacagtgtccacaactcttccggggcaagggatgcaaaggcccaggtcaggcatctaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagtgtccacaactcttccggggcaagggatgcaaaggcccaggtcaggcatctaccc 320
Query: 121 tggcttcctgcaagtttcttgcagagtccagacggacaagcactgactggctctgctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcttcctgcaagtttcttgcagagtccagacggacaagcactgactggctctgctctt 380
Query: 181 ctgtatctccacatccccttccttcccagccgcttcccttcctttccttccccatgccct 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 381 ctgtatctccacatccccttccttcccagccgcttcccttcctttcctttcccgtgccct 440
Query: 241 tttctctctttttttccttctctccttccctccctccttccttgtttccttccctccttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctctctttttttccttctctccttccctccctccttccttgtttccttccctccttc 500
Query: 301 cttcctctcttttaatttcaaaagcatgctttacatcttctgcgcccatccactgtgtga 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 cttcctctcttttaatttcaaaagcatgctttacatcttctgcgtttatccactgtgtg- 559
Query: 361 gagtgtgtgtgtgtgtgtgtgtgtgagcacttgtgacatggtgagcacatgaagccagag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 -------tgtgtgtgtgtgtgtgtgagcacttgtgacatggtgagcacatgaagccagag 612
Query: 421 gacaacttgtgggcatcggctctctcctttcaccatgtggctctcaggaatttgactcgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gacaacttgtgggcatcggctctctcctttcaccatgtggctctcaggaatttgactcgg 672
Query: 481 gtactcgggct 491
|||||||||||
Sbjct: 673 gtactcgggct 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_m17.g1 MSMg01no321_m17.g1 CHROMAT_FILE:
MSMg01no321_m17.g1 PHD_FILE: MSMg01no321_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:37 2005
(339 letters)
>mm_chr17_46232297_46233035
Length = 739
Score = 632 bits (327), Expect = 0.0
Identities = 337/341 (98%), Gaps = 2/341 (0%)
Strand = Plus / Minus
Query: 1 tgattcatggctgtgctagagacctgctgttccagaccacagcttcctagcacggtcaca 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 477 tgattcatggctgtgctagagacccgctgttccagaccacagcttcctagcacggtcaca 418
Query: 61 cagcagactgtgagagtttagaacacagccctgtcagtatcaggcaccagagagagggct 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 417 cagcagactgtgagagtttagaacacagccctgtcagtatcagacaccagagagagggct 358
Query: 121 ccagccgcctacctatctacccaaagggctggggaaatcagggtcttggactagcaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccagccgcctacctatctacccaaagggctggggaaatcagggtcttggactagcaaagc 298
Query: 181 aacttgtgtgggccttccacctgtcttctaactgaggtttatggtgacaatttatatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aacttgtgtgggccttccacctgtcttctaactgaggtttatggtgacaatttatatgta 238
Query: 241 ggttgttatcttaggaaggcattttctctagactatttgtgtgtgtgtgcaagtgtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggttgttatcttaggaaggcattttctctagactatttgtgtgtgtgtgcaagtgtgtgt 178
Query: 301 gctcatccgtgcacatgcatgtgtgt--atgtgtgtgtgtg 339
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 177 gctcatccgtgcacatgcatgtgtgtgtatgtgtgtgtgtg 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
