Query= MSMg01no322_b05.b1 MSMg01no322_b05.b1 CHROMAT_FILE:
MSMg01no322_b05.b1 PHD_FILE: MSMg01no322_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:57 2005
(556 letters)
>mm_chr17_61069363_61070318
Length = 956
Score = 932 bits (482), Expect = 0.0
Identities = 539/558 (96%), Gaps = 4/558 (0%)
Strand = Plus / Plus
Query: 1 ttcaggaattatattccttttcagagataaggtaacctgtcatagtagatgctgctttcc 60
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttcagtaattatattccttttcagagataaggtaacctctcatagtagatgctgctttcc 260
Query: 61 tttgagttagaccacttaatatcacatgtttaaggacaagactacagtactcagtacatc 120
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgagttaggccacttaatgtcacatgtttaaggacaagactacagtactcagtacatc 320
Query: 121 tatagagacagatgtacataatcaagtcctggtggagggatggaaaaatggaaagatgcc 180
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tatagagacagatgaacataatcaagtcgtggtggagggatggaaaaatggaaagatgcc 380
Query: 181 aaatccaaacaggtgaacaggagaacaggggaaaaataactttcgtctgctgtttcagga 240
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 381 aaatccaaacaggtgaacaggagaacaggg-aaaaataactttagtctgctgtttcagga 439
Query: 241 ttgaaggaagactcacactgaaggcccttgggcactcaggaatttttaccaaactttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgaaggaagactcacactgaaggcccttgggcactcaggaatttttaccaaactttcct 499
Query: 301 tgtcataaaagcctgatggtgag-aggaaaggcccgtgggttcctctccctaca-gtgtg 358
|||||||||||||||||||| || ||||||||||| ||||||||||||| || | |||||
Sbjct: 500 tgtcataaaagcctgatggt-aggaggaaaggcccatgggttcctctccataaaagtgtg 558
Query: 359 aggtaccgatacctgtccagggtccaggtgactgctttctgctcttccttcctgtgtcca 418
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 559 aggtaccaatacctgtccagggtccaggtgactgctttccgctcttccttcctgtgtcca 618
Query: 419 gcaaatccacgggcctgggttccctgatatgattttaatacatctatgtgccccatctta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcaaatccacgggcctgggttccctgatatgattttaatacatctatgtgccccatctta 678
Query: 479 gtgtatggtctttactcgcatcaataactccactatgaaactacttggcttatctttcca 538
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 679 gtgtatggtctttactcgcatcaatatctccactatgaaactacatggcttatctttcca 738
Query: 539 tagtgcttaacttctggg 556
|||||| |||||||||||
Sbjct: 739 tagtgcctaacttctggg 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_b05.g1 MSMg01no322_b05.g1 CHROMAT_FILE:
MSMg01no322_b05.g1 PHD_FILE: MSMg01no322_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:58 2005
(290 letters)
>mm_chr17_61238163_61238852
Length = 690
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1 ctagctctttgcatttggccatggacaatgagcttttgtccttggactccaaaggtaaag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 490 ctagctctttgcatttggccatggacaatgagcgtttgtccttggactccaaaggtaaag 431
Query: 61 agaaaagcaaagggtttccaatttcattttgaacaaacatatcctgctattaggagttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agaaaagcaaagggtttccaatttcattttgaacaaacatatcctgctattaggagttct 371
Query: 121 tcatgggaaaatatatatgatatgctatcaaagacagagttaagcataaaactgacacct 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcatgggaaaatatatatgatatactatcaaagacagagttaagcataaaactgacacct 311
Query: 181 gaataaacaaatgcatagaaaggggacacagagaaaatatatcaaatgcaacagctgctg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 gaataaacaaatgcatagaaaggggacacagagaaaatatatcaaatgcaacagttgctg 251
Query: 241 tcttgagggttaacaggacatttattattatttttttaaccattctttgg 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcttgagggttaacaggacatttattattatttttttaaccattctttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
