BAC Information

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BAC

Clone NameMSMg01-322H03
Chromosome17 (Build37)
Map Location 73,126,897 - 73,127,340
singlet/doubletsinglet
Overlap genenone
Upstream geneClip4, Alk
Downstream geneYpel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666, Galnt14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322H03.T7 (MSMg01no322_h03.b1)MSMg01-322H03.TJ (MSMg01no322_h03.g1)
ACCAG441140AG441141
length1,392760
length of high quality
(start - end)
---444 (79 - 522)
definitionCHROMAT_FILE: MSMg01no322_h03.b1 PHD_FILE: MSMg01no322_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:24 2005CHROMAT_FILE: MSMg01no322_h03.g1 PHD_FILE: MSMg01no322_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTTTTCTTCTTCTGCGCGTTCTCCTTCTCTNAAGGAGAGTGGGATGGA
GGACATTTNAACAACANNNTNCTTCTAATAAATTGTGGGTCGGTCGCGTG
ATACATAATGTCACGTAATATTTCTCATAGAATATAATGAATGGAATAGT
ACACGAAATATGTGTGTACCCACACTGAAAATGGTTGGTAAGCCACCCAC
ACTTGAAATACACCGGAACGCAGACAGATTCAGCCAGAACAAAACAACAT
ACGCGCAACCTCTAACCCGCTCTCTACTTACACCACCACCAGTGAAGAGA
GTGAATAAAACAGAGATACACACCGAATATAAACAGATTCATATGACGCA
GACAACTCAGAAAGCTATCAAGACACCTACAACCACAGACACAGACCGCT
AGTAACGCTCATAGTGATGTGAGTGATTATCACAATACGACGCGATATTC
TACTAGTCCGGTTGAGTGCTTTATATAGCTATTGTTGTAGCCCGCGGCGC
GCGCAGGCGACGTGCGTCTGTGCGCCCGCGTTCGCTCTGTTCCGGTCCTC
TGTTTTCCCTGCACATTACAAAAGACGACGGATATGAACGAAGTGTATAG
GAAGAGTTGAGGGATGCTTCACGGACGTTTTATGCTCCACACCCTTATTT
TCACCCTCTACTTACCTAAGAAGATACTGCTTCCTGCAGAAGGCCGGCTG
TTCATAGCACGCCGATAGAGTAACGAAGCGAAGACGGACGCGGACGAGGA
GAGAGGATCAAGAACGATGACGTAACAAAGAGGGTGAAGAGATACGGGAA
GGGGTGGCGGAAGTAGTGAGGGGGAATACAGAAAAGTAGAGCAAATAGAG
AATGTATAGTATAGAGAGAGTGACAGCAACGAGCAGAAAAAATGTGTGTA
TTAAAGACAGACAGTGACAGCAGACACGGCTGTAGAGGCTAAAGATTAAT
ACAAATACTATTACAGATAGNCGACGCCGGCGACCCGCGTGCATGTGTGT
TATCTGATCACGCACACGCGACCGTCGTGAGTTGTTATAGTTACGCCCGA
TTCAGGCGTCTAAGAACGCGCGCGGACTCGTACCGACTCGATTGATTATC
TGAGCGTNCTCGAGTGCTACTAGACTTAGTATGAGAGAAGGANATGATAT
GAACCGTCGAGAGCAGNGATGACGCGCGGAGCGACTCGCCGCCGCGTCAA
AGATGTCTATAGCGCGGTGAGAAGAGACACACTACTAGTACAACATACAA
GTAGTATACGACACTGCCCAACACACAATATAATAATACACGAACATATT
AAGAGTCGGCGGCNCGAGAGATGAAATGTCAGCATGCACACACGCGACAA
CCGCGGAGTTGAGTATAGTTGGGAGATAAGACGACTGCAGCN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCGAAATTCCACCAGCGATGGAGGTAGATCTGA
CCAGTGTGCACCTGAGGCTTTGAGGAGAGGTGGCACTCATGCCCTAGGGC
TGGATGTTCCTGTTTCAGTGTCTGTCTCTAAAGTGAGTTAACCACATCAG
GTGTGTGCAGAGATGACATGCATGAGAAGGCTGGTGGCTCTTTGCAGAGT
CTACAATGAGACAAGAGAGACCCAAGAAAGAACATCCAGAGGCGGAAGCT
ATTGTCGGATGGAGAGCAATCTCCGAATCAATGAAATGTTAGAACAATTT
AATATTAGATTAACAGGAGAATTGTGAGTTCCCCAAAGTCTTAATGTCCT
CCATAGCACAGCTGGGGCACCCGGCCAAGGAAACTTGATTAGCTGGAGTT
TTACGGGAAGCAGCATTTCCTGTGGCAGGCTTTGTTTTGTTTTTATTTTT
TTGTGAATGAGAAAACAAATGACCCTCAAGAGGGATGACCATAAAAAGAA
GGTTTCCCCCCCCTACCCCCAGCTTCTCTTTAATAGATGTTCTTGTGTCA
AATGATGCTGCGTCTTCTGGCAATCCTTGAACTTGTTCTGAACACCAGGC
TGGCCTTAAATCTGCCTGCTTCTGCTTCCTAAGTGCTGTTATTAAAGGTA
TGCGCCAACACTCTTCATTCTGATGTTGAGTCTTAAAATTGGCAGTTTTT
GTTTTGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_h03.g1 MSMg01no322_h03.g1 CHROMAT_FILE:
MSMg01no322_h03.g1 PHD_FILE: MSMg01no322_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:24 2005
         (444 letters)



>mm_chr17_73126697_73127540
          Length = 844

 Score =  804 bits (416), Expect = 0.0
 Identities = 437/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagcgatggaggtagatctgaccagtgtgcacctgaggctttgaggagaggtggcactc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 644 ccagcgatggaggtagatctgaccagtgtgcacctgaggctttgaggagaggtgacactc 585

                                                                       
Query: 61  atgccctagggctggatgttcctgtttcagtgtctgtctctaaagtgagttaaccacatc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 584 atgccctagggctggatgttcctgtttcagcgtctgtctctaaagtgagttaaccacatc 525

                                                                       
Query: 121 aggtgtgtgcagagatgacatgcatgagaaggctggtggctctttgcagagtctacaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aggtgtgtgcagagatgacatgcatgagaaggctggtggctctttgcagagtctacaatg 465

                                                                       
Query: 181 agacaagagagacccaagaaagaacatccagaggcggaagctattgtcggatggagagca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 464 agacaagagagacccaagaaagaacatccagaggcggaagctattgtcggatagagagca 405

                                                                       
Query: 241 atctccgaatcaatgaaatgttagaacaatttaatattagattaacaggagaattgtgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 404 atctccgaatcaatgaaatgttagaacaatttaatattagattaacaggagaactgtgag 345

                                                                       
Query: 301 ttccccaaagtcttaatgtcctccatagcacagctggggcacccggccaaggaaacttga 360
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 344 ttccccaaagtcttaatgtcctccatagcacagctggggcagctggccaaggaaacttga 285

                                                                       
Query: 361 ttagctggagttttacgggaagcagcatttcctgtggcaggctttgttttgtttttattt 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 284 ttagctggagttttacgggaagcagcatttcctgtggcaggctttattttgtttttattt 225

                                   
Query: 421 ttttgtgaatgagaaaacaaatga 444
           ||||||||||||||||||||||||
Sbjct: 224 ttttgtgaatgagaaaacaaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)