BAC Information

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BAC

Clone NameMSMg01-324K21
Chromosome17 (Build37)
Map Location 80,775,299 - 80,775,472
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2
Downstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324K21.T7 (MSMg01no324_k21.b1)MSMg01-324K21.TJ (MSMg01no324_k21.g1)
ACCAG442764AG442765
length736732
length of high quality
(start - end)
178 (69 - 246)578 (75 - 652)
definitionCHROMAT_FILE: MSMg01no324_k21.b1 PHD_FILE: MSMg01no324_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:03 2005CHROMAT_FILE: MSMg01no324_k21.g1 PHD_FILE: MSMg01no324_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGCTTTTTGCAATCAGAGACAATCTTTGAGGAGTTGGCTCTCTCCT
GTCCTTGGTGGGACACAAAGTCAGGTCTTCTGGTTAGCACCTCTGTCTTA
TTTTTTATATAAACTTGTTATGCGCATTTCTGCCATTGCGTGTTTGGTGC
CACATGCACGTCTAATGCTGGAGGAGACCTAAAAGGCATGTCAAATTCCC
TGNAACTGAAGTTATANAAAGTTGGAAGCTTCCATGTGCGTGCTAAGAAT
TGAACCTGGGCCTCCTGGACCATTGCTCTTCAACACTGAACCATCCCCCC
TACCCCCCCAAAGTATTTTTATCTGCCAAAAACGANNNNNNNNNNNCNCC
CCNAAAAAGGCCATTTCCAAAACCCCCCCCAACNTACAAAAACCTTGTTT
TTAAAAACCAAAAACACCGGGGCTCTAAAAAAGCGGACCCCACCTTCTAA
AAGCCCCCCCATAAAAAAAACCCCCCTGAANNTTNNNAAAAAAAACACCC
TTTTTTTTTTTGTTTTCAAGAGGTAAAAAACTTCCCTAAAAACCCTCCCC
TCCACCTCACCTCCCAAAAAATACCCACAAAAAACGCTTTCTCTTCTTTC
TCTCCTTATATTTTATTATCTTTCTTTCACCTTTNCCTAAAAATTTACAA
CTCCTCAATACTATTATATATTAGTTTATTTCTGTT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCCAGCCAGGATTGCACAGTGAT
TGTAAGACCCTGTCTCAAAGGTTAAAAAAAAAAAAAGAAGAAGAAGAACA
AGAGCAGGCCTGGCCTCATGGCCCACACCTATAGTCCCAGAATTTGGGAG
ATAGAGGCAGAGGGTCAAGAATGCAAAGCCATCCATGACTACATAGTTTG
AGATAGCCTGGGCTACATGAGACTCTGTCTTAAAACAAAATGGAAGAATA
AGAGACAGAGATAAGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCG
ACTGCTCTTCCAAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGC
TCATAACTGTCCGTAATGACACCTGACTCCCTCTTCTGGTGTGTCTGAAG
ACAGCTACAGTGTACTTACATATAATAAATAAATCTTTAAAAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGACAGAGATAAGCC
GGGCAGTGGTGGCTCACCCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA
GGCAGATTTCTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC
AGGGCTATACAGAGAAACCCTGTCTCAAACCCCCCCCTCAAAAAAAGAGA
CTGAGATAAATAAATATTTGGGCCAGGTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_k21.b1 MSMg01no324_k21.b1 CHROMAT_FILE:
MSMg01no324_k21.b1 PHD_FILE: MSMg01no324_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:03 2005
         (178 letters)



>mm_chr17_80775099_80775675
          Length = 577

 Score =  331 bits (171), Expect = 2e-95
 Identities = 174/175 (99%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagacaatctttgaggagttggctctctcctgtccttggtgggacacaaagtcaggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agagacaatctttgaggagttggctctctcctgtccttggtgggacacaaagtcaggtct 315

                                                                       
Query: 61  tctggttagcacctctgtcttattttttatataaacttgttatgcgcatttctgccattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 314 tctggttagcacctctgtcttattttttatataaacttgttatgcgcatttctgcca-tg 256

                                                                  
Query: 121 cgtgtttggtgccacatgcacgtctaatgctggaggagacctaaaaggcatgtca 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cgtgtttggtgccacatgcacgtctaatgctggaggagacctaaaaggcatgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 577
Length adjustment: 8
Effective length of query: 170
Effective length of database: 569
Effective search space:    96730
Effective search space used:    96730
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)