Query= MSMg01no325_h08.b1 MSMg01no325_h08.b1 CHROMAT_FILE:
MSMg01no325_h08.b1 PHD_FILE: MSMg01no325_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:58 2005
(638 letters)
>mm_chr17_61311818_61312856
Length = 1039
Score = 920 bits (476), Expect = 0.0
Identities = 487/491 (99%), Gaps = 1/491 (0%)
Strand = Plus / Minus
Query: 147 agatcaggatcataggtgagcctttcatttctggactgtggttaattacagatatagtca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 agatcaggatcataggtgagcctttcatttctggactgtggttaattacagatatagtca 980
Query: 207 agttgacaaccaggaatagccattacagagagtaacctggaactggagttctctatagct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 agttgacaaccaggaatagccattacagagagtaacctggaactggagttctctatagct 920
Query: 267 gtgaggctctgttggcttcctgagaatggagcctgccttctctgctagagcaacacgtgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gtgaggctctgttggcttcctgagaatggagcctgccttctctgctagagcaacacgtgc 860
Query: 327 ctgttgaatcatgttttcagccattatccacacatttttaaccctaatctgtctcatttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ctgttgaatcatgttttcagccattatccacacatttttaaccctaatctgtctcatttg 800
Query: 387 ttcagtgccctgctgttgctctgctggcacccacatgccatggcgactttttactttttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttcagtgccctgctgttgctctgctggcacccacatgccatggcgactttttactttttt 740
Query: 447 tgaatcagtagtttgtaaaatacagtaaataaaattaaatgtagaaacgatctttcataa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaatcagtagtttgtaaaatacagtaaataaaattaaatgtagaaacgatctttcataa 680
Query: 507 attgcaataggcaaagtaaaatagttgacactgtttg-aaactgacttaactttctagta 565
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679 attgcaataggcaaagtaaaatagttgacactgtttgaaaactgacttaactttctagta 620
Query: 566 tatttattgttttagggagggattataagaaatgggtgttatagttggggtagtaataaa 625
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 619 tatttattgttttagggagggattataagaaatgggtgttatagttgagttagtaataaa 560
Query: 626 cangaagatga 636
|| ||||||||
Sbjct: 559 caggaagatga 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_h08.g1 MSMg01no325_h08.g1 CHROMAT_FILE:
MSMg01no325_h08.g1 PHD_FILE: MSMg01no325_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:58 2005
(630 letters)
>mm_chr17_61137246_61138275
Length = 1030
Score = 1187 bits (614), Expect = 0.0
Identities = 626/630 (99%)
Strand = Plus / Plus
Query: 1 acatttcaagtgaaattataaggtggaatttaggtatcctttctaaagctgtactatctc 60
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 acatttcaagtgaaattatcaggtggaatttaggtatcatttctaaagctgtactatctc 260
Query: 61 cctcaatgaataaattatgaaatttccatagaaagttacagtacataatattaaaaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcaatgaataaattatgaaatttccatagaaagttacagtacataatattaaaaccaa 320
Query: 121 ggcatttttttgtatgaaccattgttgtgacacactgtatcttttcaaaaggcagaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcatttttttgtatgaaccattgttgtgacacactgtatcttttcaaaaggcagaacat 380
Query: 181 gcctatggacactctaaaagtaaaggcatgattaatgatagactttcaattaaatcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctatggacactctaaaagtaaaggcatgattaatgatagactttcaattaaatcaaat 440
Query: 241 cactgtcatagaaaactatatatgtgtgaactcatctagaggaaaaattttgcctgaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgtcatagaaaactatatatgtgtgaactcatctagaggaaaaattttgcctgaata 500
Query: 301 ctaagaagatgtagagtaaacaaaaatattcactaataactagagcctcacaggtcacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaagaagatgtagagtaaacaaaaatattcactaataactagagcctcacaggtcacca 560
Query: 361 atatataggtaaatcactaaagcctaaagagaaactccaagttactctgacagctaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatataggtaaatcactaaagcctaaagagaaactccaagttactctgacagctaaatt 620
Query: 421 gactttgtccaattctaatcattgatttataaatagaaattcagagttgcacagcattat 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 gactttgtccaattctaatcattgatttataaatagaaattcagaattgcacagcattat 680
Query: 481 gatttataaatggccagggtgagcaaacacatacaatctgcccctgattcaaggtgccga 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatttataaatggccagggcgagcaaacacatacaatctgcccctgattcaaggtgccga 740
Query: 541 gtacacattttcaaatgcattgtttcttattacataccatctagggatttcactttacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtacacattttcaaatgcattgtttcttattacataccatctagggatttcactttacaa 800
Query: 601 aatatatatagacatatttcttttggagtg 630
||||||||||||||||||||||||||||||
Sbjct: 801 aatatatatagacatatttcttttggagtg 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
