Query= MSMg01no326_j03.b1 MSMg01no326_j03.b1 CHROMAT_FILE:
MSMg01no326_j03.b1 PHD_FILE: MSMg01no326_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:18 2005
(519 letters)
>mm_chr17_57005234_57006152
Length = 919
Score = 741 bits (383), Expect = 0.0
Identities = 413/423 (97%), Gaps = 2/423 (0%)
Strand = Plus / Plus
Query: 95 tacaaattattatttaaaagctcaagcacagcagagagaaatacaagaggagcaccagga 154
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tacaaattattatttaaaagcgcaagcacagcagagagaaatacaagaggagcaccagga 354
Query: 155 aatgtcatgctgagcacaagttctgtgctccc-gtacaagagaagctgaaaggaaagcct 213
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 355 aatgtcatgctgagcacaagttctgtgctccaag-acaagagaagctgaaaggaaagcct 413
Query: 214 cctgctgaatcctggaacccctgacaggaaaatgcctaaggaattcaaggagggtttaca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctgctgaatcctggaacccctgacaggaaaatgcctaaggaattcaaggagggtttaca 473
Query: 274 caacaaagggaaacaggaataagtcaaagctcctgtgaatgcaggtcttggcactggaca 333
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 474 caacaaagggaaacaggaataagtcaaagctcctgtgattgcaggtcttggcactggaca 533
Query: 334 gtctccatccaggacgcagcaggactcagtagcatccaccgtgaacgaggagagattact 393
|||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 534 gtctccatccaggaggcagcaggactcggtagcatccaccgtggacgaggagagattact 593
Query: 394 gcagtgtgtggaagttgcctgggttgtattggagagctgagatgatggaggtgcgggcgc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcagtgtgtggaagttgcctgggttgtattggagagctgagatgatggaggtgcgggcgc 653
Query: 454 agtgggtgcgggcactgagaagcactgcacaccgggcacggagccagcccaaggtagaga 513
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 654 agtgggtgcaggcactgagaagcactgcacaccgggcacggagccagcccaagggagaga 713
Query: 514 gaa 516
|||
Sbjct: 714 gaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_j03.g1 MSMg01no326_j03.g1 CHROMAT_FILE:
MSMg01no326_j03.g1 PHD_FILE: MSMg01no326_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:18 2005
(540 letters)
>mm_chr17_57185592_57186531
Length = 940
Score = 799 bits (413), Expect = 0.0
Identities = 419/421 (99%)
Strand = Plus / Minus
Query: 1 acagagatccctcattcctggggatgaggacaaaggcaacataagtcactccatgatcag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 421 acagagatccctcattcctggggatgaggacaaaggcaacataagtcattccatgatcag 362
Query: 61 atgtgatttagaagaggtaggaacccagcttagattaggtaccacagagggctcctccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgtgatttagaagaggtaggaacccagcttagattaggtaccacagagggctcctccaa 302
Query: 121 acagccagctttgggatggagaatggaaggaaaagtagacactaaccctgaagagaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acagccagctttgggatggagaatggaaggaaaagtagacactaaccctgaagagaagga 242
Query: 181 gagaattaactttaaggatgggggtatttctcacctcttgtcacacacagacactcatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagaattaactttaaggatgggggtatttctcacctcttgtcacacacagacactcatgt 182
Query: 241 attcacacatgcactcttacatacagacacatgtatgtattcttatacacagaaacacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcacacatgcactcttacatacagacacatgtatgtattcttatacacagaaacacat 122
Query: 301 atgcacttacacacacagacatgcactcacacatgaacatatgaactttcacacatgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcacttacacacacagacatgcactcacacatgaacatatgaactttcacacatgcat 62
Query: 361 atgcacacacaaagacacactgcacactcatacatgcacacatacatttatgcactctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 atgcacacacaaagacacactgcacactcatacatgcacacatacatttatgcaccctct 2
Query: 421 c 421
|
Sbjct: 1 c 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
