BAC Information

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BAC

Clone NameMSMg01-326O08
Chromosome17 (Build37)
Map Location 88,573,901 - 88,574,137
singlet/doubletsinglet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326O08.T7 (MSMg01no326_o08.b1)MSMg01-326O08.TJ (MSMg01no326_o08.g1)
ACCAG444395AG444396
length876723
length of high quality
(start - end)
59 (42 - 100)237 (78 - 314)
definitionCHROMAT_FILE: MSMg01no326_o08.b1 PHD_FILE: MSMg01no326_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:41 2005CHROMAT_FILE: MSMg01no326_o08.g1 PHD_FILE: MSMg01no326_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGCCGCGGAATT
CTTTCCCCCTCTCAAGCACTGAGGGGGTTGGGGGGGGGGGTGGCGAGGAA
TCAACCACACACACAACAAAAGCAAGCATGCTTTCTTAAAACCGCCACAC
ACCTACTAGCTATCTGACTGGATTGACGCTCACTTCACGATCACTAAAAC
AATCCAGACCCAACAAGTCTACTGCATGTTCTTAGCTAAAAAAACTAATC
TAATAAAGATAAATAAACTTAAAAAAACAAAGCAACGACAACATCAGTCA
AAAAAAACCGGCGAAAAAGTTTTTTTTAAAAACAAAAAAAAATTCTACAC
AACTCTTTATAGGTCGATTAACTAACCGGATCCCAACATCGAAATGGAAT
AGATGCGGCCAGATGGTGGAGAGAAAATAAAAACCCCCTTTGTGATATAA
GCATTAGAGGTTATTTACACAACCAGCGTTTATTGTTTTAAATATATACT
TTATCATTTGCTTTCCTGAACGCTACACATGCAAAAATTAATTACTCTTT
CTTATATTTAAACACAAAAAGTACCATGGCCACTATACCAAGACACTTAC
AGAATTAAAAATCGCCCTCACAACCCCACCAGTAATTATGACGCCGTCTC
TGCAAAGCCACAGTAGTCGAATTGTTCTATTATACAACAACATTATTATA
TTCCATTATTTTCTCCGCCCACCCGTTATAATATCGGAGGAAAGCTCATC
ATAATAAAGCCGTTTAAGCCACTCACGCTCCCTGCAGACACCCTTCCCAT
GTGCCTCGCTTAGCCCTCTGCTGTCCTTTGTGCGGGTTGGCGCCCGCGGT
ACGTGGCACGCGCGCCGTGCTGTAGG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGCTCTCCTAGTTCCTGGAG
CCCTGAAGCTGCGAGACTCCAAAGCCTTGTGCCAGTCACAGACGACCCAC
TTTAAGAGCTTTCTGAGGCAGCCTCCTGGGCTTGGCAAACACTGTGACTT
GGTGTGATCTTGGCAGGGTGGAGCACTACTTTCATTCTGCCCTTAGAAAT
TTGGTTAGCAAGAGGTTGGGGAGGCACTTGGGGTCTGGACGACCGGCTGA
TTGAGGAGAGAGGTCGGTGATCACAGAATGTCACTAGAGTCCTTTGCACT
CACTGGAGCCCCATCAGACAGTACATGCACACTGGAAAACCTTTTTATAA
ACGAGTTCTTTTGCCCCCCCTGGTAATTTTGTGTTTTTCCAAAGCTCCAT
TTACCACTCCCTCCTAGCTTTTTACTCCTCAAGGAAAGCATGTCTTTTGT
TACCCCAGCAATGATGTCTCTCCCCTACTGAGAACATATGTGTTGACACA
ACACAAGCATCCAGCAATTCCAGCCTCTACATTTATAAAAATGGTCGGCT
TTTAGCTGAAGAGAACATCTGATACTTACTTTCCCTCCCAAAACAGCTAA
ATTGTTACCCATCTTTTACCTCTGAACAACTAAGTCAGAAACAATATTTC
CCGTATTCAAATCTTTCAGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_o08.g1 MSMg01no326_o08.g1 CHROMAT_FILE:
MSMg01no326_o08.g1 PHD_FILE: MSMg01no326_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:41 2005
         (237 letters)



>mm_chr17_88573701_88574337
          Length = 637

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%), Gaps = 2/238 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagctctcctagttcctggagccctgaagctgcgagactccaaagccttgtgccagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagctctcctagttcctggagccctgaagctgcgagactccaaagccttgtgccagtc 260

                                                                       
Query: 61  acagacgacccactttaagagctttctgaggcagcctcctgggcttggcaaacactgtga 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagacgatccactttaagagctttctgaggcagcctcctgggcttggcaaacactgtga 320

                                                                       
Query: 121 cttggtgtgatcttggcagggtggagcactactttcattctgcccttagaaatttggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggtgtgatcttggcagggtggagcactactttcattctgcccttagaaatttggtta 380

                                                                     
Query: 181 gcaagaggttggggaggcacttgggg-tctggacgaccggctgattgaggagagaggt 237
           ||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 381 gcaaggggttgggggggcacttggggat-tggacgaccggctgattgaggagagaggt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)