BAC Information

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BAC

Clone NameMSMg01-326P23
Chromosome17 (Build37)
Map Location 33,979,821 - 33,980,391
singlet/doubletsinglet
Overlap geneCd320
Upstream geneLOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7
Downstream geneLOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P23.T7 (MSMg01no326_p23.b1)MSMg01-326P23.TJ (MSMg01no326_p23.g1)
ACCAG444472AG444473
length728706
length of high quality
(start - end)		371 (46 - 416)571 (57 - 627)
definitionCHROMAT_FILE: MSMg01no326_p23.b1 PHD_FILE: MSMg01no326_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:48 2005CHROMAT_FILE: MSMg01no326_p23.g1 PHD_FILE: MSMg01no326_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAGAAGGCGCGGA
ATTCCAAGCTGTCCCGGGCTAATTACACCTGATCCAAAAGCAAACACCTG
AAGAAAAGGGAAGTAGTGAAGAGATGTGGGAAGCCACATACGCCATTACA
AGGTTGCGCTGGCTACCTCTGGCCACCACCCATAAGTTTGGGTAAACAAC
CAATGTGCGCATGTGCAGTAGAGTTTTTGCTGAGTCATTGCCTGGCCCAG
GGCATGTAAATGAGGTACTGAAAGCATAACCAATCGGGTGTAGACACGCC
TCTCCTAGGCCTATATAAGCAGTGCCAGTTCTGGGGCTCGGGGTCTTCGC
CTCTGCAATCAAGCTCTCCCAATAAACATGTGCAGAAGGATCCTGTTGTG
GCATCTTCCTTGCTGCCGACCCGGGCACTCACAAGTGGTGCCGAAACCCA
GGAAAAGAAACATCTTCAGGCATGAGCGAAGACCCCCCTGTTACAGGGAG
GATTCAGAACTGCATCACGGGGAAGGAGCGGTTAATGAAGTGTTCCCGCA
ATACAGACTGTTGAGAAGGATTCGACTGCACGGATTCAGAACTCTTAAGC
TGGGGAACGGTGGTACTGGTAAGTAAAAGAAATTAATATAAGTCTCTGAG
ACGTATGCTTTCTTTCAGAATAGATCCACCAATTGTTGCTGGCGTTGTGT
TGCTTGCTTGCTTTCCTGCCTTGATATN

TGGAGGCCGCCTGGCTGCGGTACTGGAGGTGACACTATAGAAGGTTACGN
AAAAATCCTGTTTTTTATTCTGAGGTAGGGTCTCCTTTAATAGCCTAGGT
TGGCTCTGTTCTTCCTCAGCCTGTAGAATATCTGGGAGTTACAGGCCTAG
GTCACCAAACACATTAGGTTTTACTGCTAGGAAGAAGCCAGGAGGAGCCC
TAAAATCAAAGTACCCTTGTATTCGGGTACTTACGGTCGCAGGCTTGCTT
GCGCCACTCCCCCCTGCCTTTGTGTGCGCGTGCGCGAGAATCAGCGCGTC
CTTCTGTTTGAGCGGCTGCGGCTGGAGCGGAGCAGTTCGGCTAGCTGTTG
GATGGCGCGGGGCGGAGCTGGGCGGGCAGTGGCCCTGGGCCTGGTGCTGC
CCCCCCTCTTTGGTCTCAGAACAGGCCTAGAGGCCGCTCCGGCTCCGGCC
CATACCCGGGTCCAAGTCTCCGGTGAGTGAACCCCCGTTTCTACACCGCT
TTTGATCCCGCCTCCACGCGCTGGCATCGCCTCACTATTGGCTGCGCCGC
CCATCGGTCGTTGACACTCCCCCAGCACGCGTGTTTGGCTTTAGCGTGTG
TAGAGTGGAGAGACTCGGCCCTCTGTGCGTGCAGAGGGGACCGCCACATG
GGTGCCTTCTCCTGCGATCTGCTCAGCTTCCTCCCTTATTTCTGCGCTGT
CCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p23.g1 MSMg01no326_p23.g1 CHROMAT_FILE:
MSMg01no326_p23.g1 PHD_FILE: MSMg01no326_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:48 2005
         (571 letters)



>mm_chr17_33979621_33980591
          Length = 971

 Score = 1042 bits (539), Expect = 0.0
 Identities = 563/571 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgttttttattctgaggtagggtctcctttaatagcctaggttggctctgttcttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cctgttttttattctgaggtagggtctcctttaatagcctaggttggctttgttcttcct 260

                                                                       
Query: 61  cagcctgtagaatatctgggagttacaggcctaggtcaccaaacacattaggttttactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcctgtagaatatctgggagttacaggcctaggtcaccaaacacattaggttttactg 320

                                                                       
Query: 121 ctaggaagaagccaggaggagccctaaaatcaaagtacccttgtattcgggtacttacgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggaagaagccaggaggagccctaaaatcaaagtacccttgtattcgggtacttacgg 380

                                                                       
Query: 181 tcgcaggcttgcttgcgccactcccccctgcctttgtgtgcgcgtgcgcgagaatcagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgcaggcttgcttgcgccactcccccctgcctttgtgtgcgcgtgcgcgagaatcagcg 440

                                                                       
Query: 241 cgtccttctgtttgagcggctgcggctggagcggagcagttcggctagctgttggatggc 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtccttctgactgagcggctgcggctggagcggagcagttcggctagctgttggatggc 500

                                                                       
Query: 301 gcggggcggagctgggcgggcagtggccctgggcctggtgctgccccccctctttggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||
Sbjct: 501 gcggggcggagctgggcgggcagtggccctgggcctggtgctgcggctcctctttggtct 560

                                                                       
Query: 361 cagaacaggcctagaggccgctccggctccggcccatacccgggtccaagtctccggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaacaggcctagaggccgctccggctccggcccatacccgggtccaagtctccggtga 620

                                                                       
Query: 421 gtgaacccccgtttctacaccgcttttgatcccgcctccacgcgctggcatcgcctcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgaacccccgtttctacaccgcttttgatcccgcctccacgcgctggcatcgcctcact 680

                                                                       
Query: 481 attggctgcgccgcccatcggtcgttgacactcccccagcacgcgtgtttggctttagcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attggctgcgccgcccatcggtcgttgacactcccccagcacgcgtgtttggctttagcg 740

                                          
Query: 541 tgtgtagagtggagagactcggccctctgtg 571
           || |||||||||||||| |||||||||||||
Sbjct: 741 tgggtagagtggagagaatcggccctctgtg 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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