Query= MSMg01no328_b05.b1 MSMg01no328_b05.b1 CHROMAT_FILE:
MSMg01no328_b05.b1 PHD_FILE: MSMg01no328_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:07 2005
(279 letters)
>mm_chr17_56460438_56461116
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 272/275 (98%)
Strand = Plus / Minus
Query: 5 gaattctctgttctccccagtaaaactctaagacaccatatgagcccaatggatggatgg 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaattctctgttcacagcagtaaaactctaagacaccatatgagcccaatggatggatgg 270
Query: 65 accaccactggagaaggcagtgtatagaggaatattcctcaagcatgaaaagggatattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 accaccactggagaaggcagtgtatagaggaatattcctcaagcatgaaaagggatattc 210
Query: 125 tggaagggcatggtggcgcacgcctttaatcccagtgctcaggaggcagaggcaggcgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tggaagggcatggtggcgcacgcctttaatcccagtgctcaggaggcagaggcaggcgga 150
Query: 185 tttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatac 90
Query: 245 agagaaaccctgtcttggaaaaaaaaaaaaaaaaa 279
|||||||||||||||||||||||||||||||||||
Sbjct: 89 agagaaaccctgtcttggaaaaaaaaaaaaaaaaa 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no328_b05.g1 MSMg01no328_b05.g1 CHROMAT_FILE:
MSMg01no328_b05.g1 PHD_FILE: MSMg01no328_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:07 2005
(446 letters)
>mm_chr17_56283799_56284644
Length = 846
Score = 785 bits (406), Expect = 0.0
Identities = 436/450 (96%), Gaps = 8/450 (1%)
Strand = Plus / Plus
Query: 1 cacgtgatggacattttcccacaattaaaaaaaggtggagagactgagccactgtgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgtgatggacattttcccacaattaaaaaaaggtggagagactgagccactgtgaaga 260
Query: 61 ggatgcaggtgtgaatgacctcaccgtatggcacctgccaccaagctggccgtgggtcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgcaggtgtgaatgacctcaccgtatggcacctgccaccaagctggccgtgggtcac 320
Query: 121 actgacatcagtgtgtgtcggggatgctggcagctctgagctcaggcgcacgtgcttcat 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 actgacatcagtgtgtgtcggggacgctggcagctctgagctcaggcgcacgtgcttcat 380
Query: 181 gccccacctggaccagctaacaggtgtgtgtgcacctactgtgcatgaatgtgtacctac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gccccacctggaccagctaacaggtgtgtgtgcacctactgtgcatgaatgtgtacgtac 440
Query: 241 tgtgtgctgtttt----cacgctgttctggcaggacttaggcaccgggcaccacctattc 296
||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tgtgtgctg----ggcacacgctgttctggcaggacttaggcaccaggcaccacctattc 496
Query: 297 cacatacatttattgagcaccttctggatgcaacaaaaaaacacagggcacaagctctcc 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 cacatacatttattgagcaccttctggatgcaacaaaaaaacacagggcaaaagctctcc 556
Query: 357 ctcttcaaggtcctatcatttcagggagacagacatgaagaagaaaaaagaggtctatct 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctcttcaagatcctatcatttcagggagacagacatgaagaagaaaaaagaggtctatct 616
Query: 417 tggtctgtgttgctaagcaggaacagacac 446
||||||||||||| ||||||||||||||||
Sbjct: 617 tggtctgtgttgcaaagcaggaacagacac 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
