BAC Information

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BAC

Clone NameMSMg01-328P02
Chromosome17 (Build37)
Map Location 73,108,242 - 73,108,568
singlet/doubletsinglet
Overlap genenone
Upstream geneClip4, Alk
Downstream geneYpel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666, Galnt14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328P02.T7 (MSMg01no328_p02.b1)MSMg01-328P02.TJ (MSMg01no328_p02.g1)
ACCAG445904AG445905
length758739
length of high quality
(start - end)		498 (44 - 541)537 (83 - 619)
definitionCHROMAT_FILE: MSMg01no328_p02.b1 PHD_FILE: MSMg01no328_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:14 2005CHROMAT_FILE: MSMg01no328_p02.g1 PHD_FILE: MSMg01no328_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCGGTGTAAATGCTATTATTTAGGCCACATTGCTCATCATAATAGCAG
GGAGGCTTGAAGGGACAAAAGTAATTGTGTAAAAACCAAACTCATAGCAG
AGTGTAAAACTGCAGTTACAGGGGAGGGGGCTGTGCTTAAGGTACTGTGC
TCTTGTAGAGGACCCCTTTTTGGTTTCTAGCACCCATACAGTAGCTCACA
ACCATTTTTAACTTCAGTGCCAGGGACTCAATCCCATCTTCTGACCTCTG
CAGACACTAGGCATGCGATATGATATACATAAATACATGCAGGCAAAACA
TTCATACACATAAAACAAATAAATCTTTAAAAAAATTGTAGTTCTGTCTC
AGATTTCCCTTGTTTCATTCCCACTTTGAAAGCTCTAAGAGAGAAAAAAA
TTGGGGGGGGTGTTTTATTTTTTTATCAGCTTAAAATGTGCTTATTGTTA
TCATAAAGGGTTTTGTTCATCCTGAACAGAACTTTACTTTCTAAACAGAA
CAGAACAGAACTTTCACAAGTTCATGAAGCACATAGCATTGTTGTTATGC
TGTTTCTGTTGATATTTTTGATGTTTCTCTCTTTTTATTTTGTCCTCTGC
TCTTCTTTACTCTTCCCTTCTCTATTTTTTTATCTCCTTATTTCCATCTA
TGTCCTGTCGCGAATCTCATTTAAGCTTTTTTCTCTCGATATCTATTCCG
TTATTCTG

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAATCAGCAGCAGCTC
AATCCACTCACAAACACTTCATGAGTACGCCAGCAGTCCATTTCAGTAGT
GTTGGGATAGCAAACATGAATCAGCAGCAGTGGTACGACCTAGCAGAAAC
AGCCAAGAAGTTCTCTGCTTTCCTGCTCTCAACAAAGCGAAGATCAGTGA
AGACAAAGAAGCGAGACCAAGAAGAGTTGCAAGGCTAGCAATGCGGGCCT
CATCACTGTCCATTGAGTACTACTTATACTCCCTCCAAATGTCATGTGTC
TTCCCACAGGTCTTGCCTCACCACTGGATGTGAATCTGTATCAGTTGACA
TCACTCAGCCCATTAGCCCAGGTTCATGGAAGTGGCAAGAAGCCACCAGA
ACACCACCAGAACTTTTGGGTGTGTTTCTCTCTCTGGGCTCATGACAAAC
GTAGCTCAGCCACACAATGTAAAGTGAACCAATGCATGCGTGGCTAGCAA
AGAATCCTTCATCACATGTCCTCGAAACATTCCTTCATGTGTCTGCTTTA
GCAAACCACCCTTTCACCTGTGTCTGCTTCGGCAAAGCGTTCTTTGATAT
AGCTGATTTCCCAACGAAACCACAAGGTTTCTACTTTCATGTGCCCCTTA
TGCACTTGCCTTGCTCGGGTATTATCAATTACAGTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_p02.b1 MSMg01no328_p02.b1 CHROMAT_FILE:
MSMg01no328_p02.b1 PHD_FILE: MSMg01no328_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:14 2005
         (498 letters)



>mm_chr17_73108242_73109139
          Length = 898

 Score =  586 bits (303), Expect = e-171
 Identities = 321/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccggtgtaaatgctattatttaggccacattgctcatcataatagcagggaggc 63
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 327 ggaattccggtgtaaatgttattatttaggccacattgctcatcataatagcaggggggc 268

                                                                       
Query: 64  ttgaagggacaaaagtaattgtgtaaaaaccaaactcatagcagagtgtaaaactgcagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgaagggacaaaagtaattgtgtaaaaaccaaactcatagcagagtgtaaaactgcagt 208

                                                                       
Query: 124 tacaggggagggggctgtgcttaaggtactgtgctcttgtagaggacccctttttggttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tacaggggagggggctgtgcttaaggtactgtgctcttgtagaggacccctttttggttt 148

                                                                       
Query: 184 ctagcacccatacagtagctcacaaccatttttaacttcagtgccagggactcaatccca 243
           |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 147 ctagcatccatatagtagctcacaaccatttttatcttcagtgccagggactcaatccca 88

                                                                       
Query: 244 tcttctgacctctgcagacactaggcatgcgatatgatatacataaatacatgcaggcaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 87  tcttctgacctctgcagacactaggcatgcgatatgatatacataaacacatgcaggcaa 28

                                      
Query: 304 aacattcatacacataaaacaaataaa 330
           |||||||||||||||||||||||||||
Sbjct: 27  aacattcatacacataaaacaaataaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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