NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATTTGTATAACTAGCCACTGTGGATTAACCCATTTATTGCATG
TGATATATATTATTTAATAATGTCTTATTGTAACTAAATCAGAAAGGTAT
TATTTTAATAGTATCATTTTATCCTATCAAAGTAAAAGCTCTTGAGGAAA
AAAACATTTGTTTAAATTTTCAGGGCAAAACTAAGTTACAGGATAAATAA
TGGTTTTATGTAAGCTATAACTACCTATTGTTTTTCTTATCACATTTGTA
ATAGGTGGATATTCCTCTCTCCTTCCTCTGTCTCATTTATCTATGGGCAA
CAATGACTTGCTTTCTATGCTAACACAAGTTAAGATTCTAAGTAACTGAC
TTTAAAATGGGGACTTTGTCCTGAGTTATTTAACTGTACCCCATGAAACT
GGCCTTTACAGGGAATAAAAATGCCAAAGAGAGAGAGGAGAGAGATAGAC
AGAGACAGAGAGACAGGCAAAGACAGTGATAGACAGAGCCAGGGAGATAG
AGAGACAGAGATAGACAGAGACTCCTGTTATTTTTAGAAGCCACTAGTAG
ATTTCACATTGAACTTTGAAAAAGTAAAGCCCAGAGTTAACGCACCACCT
GCCAGCTACCAAATGTTTTATGTACACTATCTTATTAAGCCCTCAAAACA
ATCCTGGAAGGCACAGGGTGTTCTT

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCCCAGTCACTGCCCGTCTC
CGGGCGTAGTAATGGCGTGATGGGCGAGCAACGAATCAGGAGCTGTCACG
CCACATCAGGTGCTGAAACGTCATGCTGCGGGCTATATAAGCAGCGCCAT
TTTCTGGGTTCGGGGTCTTCCTGAGAAGTAAGCAATAAAAGCTTTGCCAT
AGAAGGATCCGATTGTCCGAGTGAATTCTTGCTGGCAAGATACTAGCTCG
GGCGAGAAATATTCACTTAAACTGCATACAAAATACTTATCTTTATACTC
AGAAATGTTTAGTTTCACCTCTTGTCTTACTTATGGTTTCTACTGTTGTG
ATAAGACACCATGACCCAAAACAACTTGGGGAGGAAAAGGTTTATTTCAC
TTTGAAGATTTAATGAAAGGAAGCCAGGACAGAAACTGAGCAGAGACCAT
GGAGGAATTCTGCTTACTGACTTCATGGCTCCCTCAGACTACTTTCTGAT
ACCACCCAGGATCACCTGCCCAGGAGTAGCACTGTCACCGCCCCCCCTTC
CATATCAAATATTGATCAAGATAATGCTCTACTAACAGGCAATCTGATAG
AATTTTTTTTCAGTTGAGGTTCCTCTTCTGGTAAAATTCTAGCTTGTATC
AATTTTGACAATAGCTAGCCAGTATAGCC

Query= MSMg01no329_e13.b1 MSMg01no329_e13.b1 CHROMAT_FILE:
MSMg01no329_e13.b1 PHD_FILE: MSMg01no329_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:41 2005
         (671 letters)



>mm_chr17_78366436_78367504
          Length = 1069

 Score = 1112 bits (575), Expect = 0.0
 Identities = 617/631 (97%), Gaps = 2/631 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatttgtataactagccactgtggattaacccatttattgcatgtgatatata 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggaattctatttgtataa-tagccactgtggattaacccatttattgcatgtgatatata 571

                                                                       
Query: 64  ttatttaataatgtcttattgtaactaaatcagaaaggtattattttaatagtatcattt 123
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 570 ttatttaataatgtcttactgtaactaaatcagaaaggtattgttttaatagtatcattt 511

                                                                       
Query: 124 tatcctatcaaagtaaaagctcttgaggaaaaaaacatttgtttaaattttcagggcaaa 183
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 510 tatcctatcaaagtaaaagctcttgagg-aaaaaccatttgtttaaattttcagggcaaa 452

                                                                       
Query: 184 actaagttacaggataaataatggttttatgtaagctataactacctattgtttttctta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actaagttacaggataaataatggttttatgtaagctataactacctattgtttttctta 392

                                                                       
Query: 244 tcacatttgtaataggtggatattcctctctccttcctctgtctcatttatctatgggca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 391 tcacatttgtaataggtggatattcctctctccttcctctgtctcatttatttatgggca 332

                                                                       
Query: 304 acaatgacttgctttctatgctaacacaagttaagattctaagtaactgactttaaaatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acaatgacttgctttctatgctaacacaagttaagattctaagtaactgactttaaaatg 272

                                                                       
Query: 364 gggactttgtcctgagttatttaactgtaccccatgaaactggcctttacagggaataaa 423
           ||||||||||||||||||||||||||||||| |||| ||| | || | ||| ||||||||
Sbjct: 271 gggactttgtcctgagttatttaactgtaccgcatgtaaccgtccctcacaaggaataaa 212

                                                                       
Query: 424 aatgccaaagagagagaggagagagatagacagagacagagagacaggcaaagacagtga 483
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 211 aatgccaaagagagagaggagagagatagtcagagacagagagacaggcaaagacagtga 152

                                                                       
Query: 484 tagacagagccagggagatagagagacagagatagacagagactcctgttatttttagaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tagacagagccagggagatagagagacagagatagacagagactcctgttatttttagaa 92

                                                                       
Query: 544 gccactagtagatttcacattgaactttgaaaaagtaaagcccagagttaacgcaccacc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  gccactagtagatttcacattgaactttgaaaaagtaaagcccagagttaacgcaccacc 32

                                          
Query: 604 tgccagctaccaaatgttttatgtacactat 634
           |||||||||||||||||||||||||||||||
Sbjct: 31  tgccagctaccaaatgttttatgtacactat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1069
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1059
Effective search space:   699999
Effective search space used:   699999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)