BAC Information

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BAC

Clone NameMSMg01-330G13
Chromosome17 (Build37)
Map Location 94,371,902 - 94,372,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
Downstream geneLOC668885, LOC668886, Mettl4, 2700099C18Rik, LOC100043754, LOC668888, LOC100038868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330G13.T7 (MSMg01no330_g13.b1)MSMg01-330G13.TJ (MSMg01no330_g13.g1)
ACCAG446975AG446976
length733758
length of high quality
(start - end)
320 (46 - 365)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no330_g13.b1 PHD_FILE: MSMg01no330_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:06 2005CHROMAT_FILE: MSMg01no330_g13.g1 PHD_FILE: MSMg01no330_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAATCAGTTCTACTGCTCTCCAACCCAACTCATTTCCTTCTCT
GTTTTAAAGTGGATCATAGGAACTCCTTTCTTTCTAAACAAAGAATATAT
TTCCTCTGGAAAGTTTATAATGAAGGTTTTATATGATATTGGTCTTTAGA
AAATTCCTGAACATATCCCTGTGTTCTGTGTCACATGTCATTGTCTTCGA
CCAGGAAATTTGACTTTCATATTATTTTTATTTTGTGCCTATTTTCAAGG
GTCTGAAGAACAATAGTAGTCCTTTTGAATTGATTCTTAAGATGTTAGTC
TAGTATAATTCTAATATTACCTAAATATTACCAATGAAATAATAGGAGTA
AAATTAAAAAGGTATTCAACTTTTATGGCTAGTGTAGTCAGCATGAATAT
GAGTTAAGTTGGAAAAGGAAATGAATTCTCAATCTTAATAATTTGGAAGC
AGAAATCTAACAAAGAAACAATGTGGAATTGTTCCTTTGTGATTTACAAT
ATTTGATTGAGTTTTTCTCTTGGCATTTTTGTTTACTTCCTTTTCTTCAA
AGTGAAAACATGATGTTTTCCTTCACAGGCAATTGCTATTCCTTTCAATT
TGGAGCTGATAAATCCTTACTGAAAATGGCAAATGAGGTCAAAAGTGTCC
CCAGAGACTCATCTTGAGTCTTCTTCAGATACT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTTATGTTCAATACCAAATT
CCTTACCAAATGATATAAAGTTGTTGTTGTCAGTATAGGCTGGCCCATTA
TCTGTCTTAATAACTTTTGGTAATCCATAGCATTAAGGCTTGTAAACAAT
GATTAATTATACTTCTAGAGGCTTCTCCCATATGTAGAGAAGCAAAAAGG
AATCCTGAACAAGTGACAAAACAAACATGTATACATTTCAATTTTCCAAA
TTCTGCAAAATGAGTTACATCCATTTGCCAAATATGATTGGTCATAAGGC
CTCATGGATTAACCCCTATAATCATAACCCCCGCACCCCCAGCAGTTAGG
ACATTGTTTTATGGCCATTCTTGCCTGATCCTTAAAGATCTTAAGGCTCT
GGCCTTAAGATATGGCAAGAAAGATGAAATTTATTATGATCATGTCTAGC
CAATGAACAGGATCTGAAACTAGGGCCTCTCCTATTAGAACTCTATCACT
TCAATCATTGCCTGCAGCTAAAGGTCCAGGAAGGCCAGAATGTGCTTGTA
TATGACCAATACAAAAGGGACTTTCTTGAGCAAGAATGATGTTTTGCAAT
TGTGAAAACAGAGATCCTGCTGGCATATTAAAATTAAATGTATCACAAAT
TTCCAACAGGGGATTAGACTGTGACCCATATATACCATCCGTAAAAAGAA
TAAAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_g13.b1 MSMg01no330_g13.b1 CHROMAT_FILE:
MSMg01no330_g13.b1 PHD_FILE: MSMg01no330_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:06 2005
         (320 letters)



>mm_chr17_94371764_94372483
          Length = 720

 Score =  563 bits (291), Expect = e-165
 Identities = 314/333 (94%), Gaps = 18/333 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaatcagttctactgctctccaacccaactcatttccttctctgttttaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattctttaatcagttctactgctctccaacccaactcatttccttctctgttttaaag 412

                                                                       
Query: 65  tggatcataggaactcctttctttctaaacaaagaatatatttcctctggaaagtttata 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tggatcgtaggaactcctttctttctaaacaaagaatatatttcctctggaaagtttata 352

                                                                       
Query: 125 atgaaggttttatatgatattggtctttagaaaattcctgaacatatccctgtgttctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atgaaggttttatatgatattggtctttagaaaattcctgaacatatccctgtgttctgt 292

                                                                       
Query: 185 gtcacatgtcattgtcttcgaccaggaaatttgactttcatattatttttattttgtgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtcacatgtcattgtcttcgaccaggaaatttgactttcatattatttttattttgtgcc 232

                                                                       
Query: 245 tattttcaagggtctgaagaacaata------------------gtagtccttttgaatt 286
           ||||||||||||||||||||||||||                  ||||||||||||||||
Sbjct: 231 tattttcaagggtctgaagaacaatagaagagagccaaattcatgtagtccttttgaatt 172

                                            
Query: 287 gattcttaagatgttagtctagtataattctaa 319
           |||||||||||||||||||||||||||||||||
Sbjct: 171 gattcttaagatgttagtctagtataattctaa 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)