BAC Information

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BAC

Clone NameMSMg01-330M20
Chromosome17 (Build37)
Map Location 50,333,493 - 50,506,633
singlet/doubletdoublet
Overlap geneEG668475, EG628747, LOC100043818, Dazl
Upstream geneMocs1, Daam2, Kif6, EG668470, Rftn1
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330M20.T7 (MSMg01no330_m20.b1)MSMg01-330M20.TJ (MSMg01no330_m20.g1)
ACCAG447260AG447261
length747751
length of high quality
(start - end)
239 (127 - 365)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no330_m20.b1 PHD_FILE: MSMg01no330_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:35 2005CHROMAT_FILE: MSMg01no330_m20.g1 PHD_FILE: MSMg01no330_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,506,395 - 50,506,633)(50,333,493 - 50,333,783)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATTTAAGATGTCCGTGGCGGTCTAGGGTATAGCTCAGTTGATAG
GATGCTTGCCTAAACTGCTTTAACCCCTAGGAACTCTAAAATCAGCTGTG
GCTGAAATCCCAGGGGAAGAGGCAGAGGGATCAGAAACTCAAGGTTACCC
ATGAGATCTGCCAGGGTTATATGTGACCCTGTTGTTTCAAAACAAATCCC
TAAAAGTCAGGTTACTGGGTGGTAAATATATAAATCTAGCCATTACTCTT
GCATGGACTTAGGCTGTTAGCAGAATCCTTCTTCTTTGCTAACAAAACTC
CAGGTATTTTTGTTCGNTTTGTTTGCCCCCCCCCGCGCTTTCAGGGTAGT
GTTTATTCATCCACCCAGCAGCTGTGGTAAAAAAAAAAGAAAGTAGGTGA
TAGTAACTGGGTGAAGCCACTGGAGCGATGGGCAGCTGGTCTCAGTCTCT
ACCTTCCCACACTAACATCTGTGAAGCCAACTCCTGAGGCTGGGCCTCTT
GGTGATATCCAGGAACTTCCTGGACACACTAACAATTCACCGTTTCCGTG
CTATATGAGACAAGAACACTGATCTTGGGCCTAAATCTCCTGCCTCTGTG
CCCAGCTCAGTTGCATCGACCGCTAGCAACATTAGATTTTTACATTTAAG
TCCATTCAAAGGTTCAAAAATACACCCCCAAGATCAAATGGTCTTTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATATGTATGCCCTTTCTGTTCT
CCAGATATAAAGAGAGAACGCATGGAGAAACATCCCTGGTACCTGTATCG
TTTCCTTTTCTCAGCGCTGGGATGAAATGTCTGATGAGGTGGTAGCTCAC
AGGAAGGAGGGCATATTTAGACCAGTGTTTCAGGAGATGCTGCCCATCGA
GGTGGGGGAAGCCATGGTGAAGGGAACTTGTTTAGATCTGTGGCTGACAG
GAAACAGCAACTCCTCCTGAAGCAGTGGCTCTTTACAAACTTCAAGAACT
ACCACACTCCATGCTTCTTATTCTAGGCCCCACCCACCGAAGTTCCATAG
TCCCTCCAATCCCCCTCAAAAAATATTACTATCAGCTGGAGACCAATTTG
CATGAGTCTATGAGAGACATTTGACACTGAACTATAACAGTACGTGGATG
TTAAATTATTTTACATAGTAACTGATAGGATTTTTCCTTCCACCTCCTCT
CCATCCCCACTGTCTTTTTGTCCACACTGAACTTTCTTAACACCAGAGAA
AAAGTCCAGGAGGCCGTTGTGTCAGGCTGTCAGGCCCTTTGTCTCTGGTC
GGGAGGATAAGGAAATGCGCAAATGTTTGTCATTATCTAGATTTATTACA
CCTAAAGTAAATACGCTTGGTTTTTTACAAGGAAGAGCTACTTTTATAAC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_m20.b1 MSMg01no330_m20.b1 CHROMAT_FILE:
MSMg01no330_m20.b1 PHD_FILE: MSMg01no330_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:35 2005
         (239 letters)



>mm_chr17_50506075_50506713
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggaactctaaaatcagctgtggctgaaatcccaggggaagaggcagagggatcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctaggaactctaaaatcagctgtggctgaaatcccaggggaagaggcagagggatcagaa 500

                                                                       
Query: 61  actcaaggttacccatgagatctgccagggttatatgtgaccctgttgtttcaaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 actcaaggttacccatgagatctgccagggttatatgtgaccctgttgtttcaaaacaaa 440

                                                                       
Query: 121 tccctaaaagtcaggttactgggtggtaaatatataaatctagccattactcttgcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tccctaaaagtcaggttactgggtggtaaatatataaatctagccattactcttgcatgg 380

                                                                      
Query: 181 acttaggctgttagcagaatccttcttctttgctaacaaaactccaggtatttttgttc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acttaggctgttagcagaatccttcttctttgctaacaaaactccaggtatttttgttc 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_m20.g1 MSMg01no330_m20.g1 CHROMAT_FILE:
MSMg01no330_m20.g1 PHD_FILE: MSMg01no330_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:36 2005
         (291 letters)



>mm_chr17_50333293_50333983
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatatgtatgccctttctgttctccagatataaagagagaacgcatggagaaacatccc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ccatatgtatgccctttctgttctccagatataaagagagaacgcacggagaaacatccc 260

                                                                       
Query: 61  tggtacctgtatcgtttccttttctcagcgctgggatgaaatgtctgatgaggtggtagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtacctgtatcgtttccttttctcagcgctgggatgaaatgtctgatgaggtggtagc 320

                                                                       
Query: 121 tcacaggaaggagggcatatttagaccagtgtttcaggagatgctgcccatcgaggtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacaggaaggagggcatatttagaccagtgtttcaggagatgctgcccatcgaggtggg 380

                                                                       
Query: 181 ggaagccatggtgaagggaacttgtttagatctgtggctgacaggaaacagcaactcctc 240
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggaagccatagtgaagggaacttgtttagatctgtggcagacaggaaacagcaactcctc 440

                                                              
Query: 241 ctgaagcagtggctctttacaaacttcaagaactaccacactccatgcttc 291
           |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 441 ctgaagcagtggctttttacaaacttcaagaactaccacacgccatgcttc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)