BAC Information

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BAC

Clone NameMSMg01-330O10
Chromosome17 (Build37)
Map Location 19,799,830 - 19,800,117
singlet/doubletsinglet
Overlap geneEG224572
Upstream geneVmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576
Downstream geneEG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330O10.T7 (MSMg01no330_o10.b1)MSMg01-330O10.TJ (MSMg01no330_o10.g1)
ACCAG447335AG447336
length743743
length of high quality
(start - end)
360 (384 - 743)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no330_o10.b1 PHD_FILE: MSMg01no330_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:43 2005CHROMAT_FILE: MSMg01no330_o10.g1 PHD_FILE: MSMg01no330_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCG
GAATTCTCACCTGTGGCCTACCAAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGACCTGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGTCTCAACCGGCCACAGGGACACATGCTCCACTAT
GTTCATAGCAGTCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
TCCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATTCCAAA
GGAACTCGCACAATATGTACTCGCTGATAAGTGGATATTAGCCCAGAAAC
TTAGGATACACAAGATATAAGATACAATTTGCTAAACGCATGAAACTCAA
GAAGAATGAAGACCAAAGTGTGGACCCTTTGCCTCTTCCTATN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGAAATAGTGAGAGCAATGATAA
AGCCAATTCCAAATCACAATATAGCTAGGAATGGAGCCATAATCACTGTT
AATATACATGAGGGAACACATGGTAGAAAAAAAATCCAGAATGGCATTTC
TACATGAGAAATGTTCTAGAAACTTGGTTGTCTTTTAATATGCAACGTAG
CTCACAATGGTGCATAGCTCCAATAAAATATTACGGTCTATTAAAAACAA
AATTGCCTAGAATTGAATTCTTATGATACATCAATTTTTCAAACTATGTA
GAATAAAAATGATTATTTATTTGACGACCCCCATTTTGATATATATTTTC
AAATCCATATTTAATTGATGTGAAGGAAAATAATTCACTCTCATAACTCC
TGGAGAAAAATCTCATTTTGACTTGGACAGATTCAAGATATGTCAACCAA
AGGACTGAATATTTTGGCCAATAATATGTTTTATGCATTTCAGATTCCTT
GTTCTGCACCTGTGGCCCTGATCTTGAACTTAGAACAAACATTTCAGCGT
GAGAACATTTCTTCGAACATTTTTACCTTCACCTGCAAATGAAGGCTACA
TCAAAAGTATATACATGCATGCAAATGATGGATGTGATAAGAAGTGAGAA
AATACTATACCATGAATGTGAGTATAATACAAGCAAAATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_o10.g1 MSMg01no330_o10.g1 CHROMAT_FILE:
MSMg01no330_o10.g1 PHD_FILE: MSMg01no330_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:43 2005
         (291 letters)



>mm_chr17_19799630_19800321
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagaaatagtgagagcaatgataaagccaattccaaatcacaatatagctaggaatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 aaagaaatagtgagagcaatgataaagccaattccaaatcacaatatagttaggaatgga 429

                                                                       
Query: 61  gccataatcactgttaatatacatgagggaacacatggtag-aaaaaaaatccagaatgg 119
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 428 gccataatcactgttaatatacatgagggaacacatggtagaaaaaaaaatccagaatgg 369

                                                                       
Query: 120 catttctacatgagaaatgttctagaaacttggttgtcttttaatatgcaacgtagctca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catttctacatgagaaatgttctagaaacttggttgtcttttaatatgcaacgtagctca 309

                                                                       
Query: 180 caatggtgcatagctccaataaaatattacggtctattaaaaacaaaattgcctagaatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 caatggtgcatagctccaataaaatattacggtctattaaaaacaaaattgcctagaatt 249

                                                           
Query: 240 gaattcttatgatacatcaatttttcaaactatgtagaataaaaatga 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaattcttatgatacatcaatttttcaaactatgtagaataaaaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)