BAC Information

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BAC

Clone NameMSMg01-331B21
Chromosome17 (Build37)
Map Location 46,027,259 - 46,027,608
singlet/doubletsinglet
Overlap genenone
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331B21.T7 (MSMg01no331_b21.b1)MSMg01-331B21.TJ (MSMg01no331_b21.g1)
ACCAG447497AG447498
length744813
length of high quality
(start - end)		370 (42 - 411)---
definitionCHROMAT_FILE: MSMg01no331_b21.b1 PHD_FILE: MSMg01no331_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:58 2005CHROMAT_FILE: MSMg01no331_b21.g1 PHD_FILE: MSMg01no331_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATACGCGGAATTC
GAGCAGAATCTCCCAGGCAGAAACCAGAGGATGGCTGCTTGTGGGCCTGT
TTACTCACAGGTTCACGCTTAGCTAGCTAGCTTGCTTGCTTGTTTGCTTA
TCCTTTCGTTTTTTCTTTTTCTCTTCTCTGTTGACATCATCTTCTTCTTC
TTCCCCCTTCTCTTCCTCTTCTGCTTTTCTCCTCCTCTTCCTCCTCTTCT
TCCTCCTCTTCTTCTTCCTCCTCTTCTTCTCCTCTCTTCCTCCTCTTCTC
CCTCCTCTCTTCTTCTTCCTCCTCTTCCTCCCCCTCCCTCTCCCCCTCCC
CACCCCTCCTCCTGTGTACCCCTGGTGATCCTGGAACCCACTCTGTAGAC
CAAGCTGTCCTCACACACCCACCTGCTTCTGCCTTCCTAGTGCTGGAATT
AAAGGCATGGGGAACCACAGTAGTTTTCTTATATACAGCCCAGGACTAAT
TGCATAAGGATGGTGCCACCCATGGTGGGCCAGGCTCCAGTGCTTTGACT
AACAATCTGATCTAGGTTATTATTTAATCAACACTTTTCTCTCAGGGGAC
TCTATGCTGTGTCAAGCTGACCAGGATAGGTACTTTATAGATATGAAGTC
ACTCAATCCTCACAACCCTGATAATCGTGCTGTTATAACCTTCATTCACA
AAGAGGAAACTGATTCACGCATCTGTTGAGCCATTCATATAATG

AAGTGGGAGGCCCGGNGGNCGCCGGGCCTACCNNACCCCGNNAACNANAG
AAGGACTTACCNNACCCGAGGGNCNGGNCAGGGCAAGNCCNCCGGCAGAG
CCAGCACNGGTTTACCCCCAAAAGGACCNGNAGGAAAGAGGAGGGGGGAG
GNCACAGGNGCNGNNCANAAGGGAGCACACCCGCCNGGGGCNCACNNCCG
CGAGACAGGACNCNCNCCCCCAACCCGGGACAAACGGCNCGGGAAGTTTT
TTTGTGCCATCGAGAGCGGCTGCCAGGATGGCGGCTATGACGGCTGGCCC
AGCCGCGGGCGCCTTTTTTTGTTTTTGACCGGGCCGCCCGCGCCCGGAGC
CACAGAGCGCAAAGCCCCCCCCCCCCCCCGGAAGAGAGAAAAGAAAAAAA
AAAAAGACGCACCGACCGCCCCCCCCCCCACCCCCAAGAGGACAGACCCC
GCAAAAACCCCGAGCCACCGCGCCGCGCCCCCCCCAGCAGCCAAAGCCCA
CCCCCCACCAAGCGGGAGAACGGCGGCCGGCCAACAAGCACGGGCCCCCG
AGCCGGGGACCCGCCGGGCGGCGGACCGAACCGGCGGGAGCCCGCCCCGG
CCCGCCCCGCGGGGCAGAGCACAAGGAGCGCACGCCCGGGGGAGGGCAGC
AGCGCCGCGCCCGCCGGAGCCGCGCCGCCCCCCCCCCCGGCGCGGGCGCC
CCGGGCCCGGCGCCTTTTTTTTTTCTTCTTGTTGGCGGCGCCGCTTTTTA
CCCCGCTATTTGTCTGCTGTCGCTCTTTTCCCTCGCTTTCTCCCCTTTTT
TTCCCTGTGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_b21.b1 MSMg01no331_b21.b1 CHROMAT_FILE:
MSMg01no331_b21.b1 PHD_FILE: MSMg01no331_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:58 2005
         (370 letters)



>mm_chr17_46027259_46028030
          Length = 772

 Score =  565 bits (292), Expect = e-165
 Identities = 334/356 (93%), Gaps = 17/356 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcgagcagaatctcccaggcagaaac--cagaggatggctgcttgtgggcctgttt 61
           |||||||||||||| |||  ||||||||||  ||||||||||||||||||||||||||||
Sbjct: 350 gaattcgagcagaaactcaaaggcagaaaccacagaggatggctgcttgtgggcctgttt 291

                                                                       
Query: 62  actcacaggttcacgcttagctagctagcttgcttgcttgtttgcttatcctttcgtttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 actcacaggttcacgcttagctagctagcttgcttgcttgtttgcttatcctttcgtttt 231

                                                                       
Query: 122 ttctttttctcttctctgttgacatcatcttct-----tcttct---tcccccttctctt 173
           |||||||||||||||||||||||||||||||||     ||||||   |||||||||||||
Sbjct: 230 ttctttttctcttctctgttgacatcatcttcttcttatcttcttcctcccccttctctt 171

                                                                       
Query: 174 cctcttctgcttttctcctcctcttcctcctcttcttcctcctcttcttcttcctcctct 233
           ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||
Sbjct: 170 cctcttctgcttttctcctcctcttcctcctcttct------tcttcttcttcctcctct 117

                                                                       
Query: 234 tctt-ctcctctcttcctcctcttctccctcctctcttcttcttcctcctcttcctcccc 292
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcttcctcctctcttcctcctcttctccctcctctcttcttcttcctcctcttcctcccc 57

                                                                   
Query: 293 ctccctctccccctccccacccctcctcctgtgtacccctggtgatcctggaaccc 348
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  atctctctccccctccccacccctcctcctgtgtacccctggtgatcctggaaccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 772
Length adjustment: 9
Effective length of query: 361
Effective length of database: 763
Effective search space:   275443
Effective search space used:   275443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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