BAC Information

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BAC

Clone NameMSMg01-332G01
Chromosome17 (Build37)
Map Location 85,485,850 - 85,486,350
singlet/doubletsinglet
Overlap genePrepl
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1
Downstream geneLOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332G01.T7 (MSMg01no332_g01.b1)MSMg01-332G01.TJ (MSMg01no332_g01.g1)
ACCAG448426AG448427
length1,1841,251
length of high quality
(start - end)
---503 (187 - 689)
definitionCHROMAT_FILE: MSMg01no332_g01.b1 PHD_FILE: MSMg01no332_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:45 2005CHROMAT_FILE: MSMg01no332_g01.g1 PHD_FILE: MSMg01no332_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGCCCGCTCTTGGCGNNCCATTCGCGCTATCGACTCCTATAGGGG
AGGATCCGCGGAATTCAGCACTCGTGCTCNNCCTTACTATCTAGANANNN
NNNNNNNNANNNNNNNNNNNNNGCCCCTCCTTAANCNAGNNGNNNANNNN
NGNNNNNNNANNNGGANNNNNNNGNAGGGNNNNGGNGANNANNAGGNGNN
ATCGNCTNNGNGNANNNNGAAGNNAANAANNNANNAGGGNNNNNNANNAG
GGANNANNNNAGANNCCNNNNNNNGGNAGNNANNNNGGGNNAAAAANANG
GGNNNGGNGANNGGANNNNNNNNNGNAAAGGNNAAANNNAGNNAANANNN
GGAGANNNNAGNNNNNAGAGGNNANNAGNNNNGGANNNANGGAGAANGNG
GNAGNNGGGAGGNANAGNNNATTTTTNATGAGNGANNNTATTTNNNNNAA
TGGGTNATTATTNAGTNAGAGGTTNNATTTAANNTGAATANTGAATTGGA
GNNAGGTATGTTGANAGGNANNTATAGTNNNAGTTANTTANAAGGTTGAG
GNAGGAGGATTGGTTGANNNTGGGAGGTNGGAGTTAGATTGGGNAANANA
AGANAAGATTATATNAAATTTATGAATNAAAANATATGGANAATTAGNAG
AGAGTNTTTGNAGAAGGGTTGGTTTTTNTAAGNGTGGTGGNTTNTGAGGT
GGTGATTGAAGNANNTTGGTTGAGNNGANTTAAGTTTTGTGGTGGTGGGG
GGTTGGGGGGAGGATGNTTTATNNNAGGAGNTTNGGGGGGGNAANTGGTG
TTATTTNGTNAGNNGGGGNNGGANGGGNNNTTGGGGAAGGGAAAGGAAGG
ATAANNNNGGGAAAAAAAGGGAGAAAAGAAATTTGGGAAAGGAGNNGAAG
AAAGAGAGGGGGGGAGGGNGGGAAGAGGGNAAAAAAAAGGAGNNAAAGGG
GGGGGGNGGAGGGGGGNGGGAAAAGGAAGGGNGGGGGGGGGGGGGGGAAA
GAAAANGGAAGGAAGGGGGGAGGGGGAAGAAAGAAGAAAAAAAAGGGGGG
GAGGGAAAGGAAAGAAAAGGAAAANNGGGGGGAGGGAAGGGGGGGAGAGG
AANAAAAANGAGAGGGGAGGAGGGAAGGGAGGGGAAGGGAAAGNAAAAGA
GGAAGGAGGAGGGGAGAGAAAAGAGAGGAAAAGT
CGCTCTTTTNNNNACCGAGGGGTAGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATTAAGGTTCTTGNNTNACCAANTT
TGTTTTGTTTTTTCTTTTAGCTCAGTGCTTGTTCTTGGNTAACTATTTGA
CACATATATGTCTTTTGGNTTTGGNTTTGGNTTTGGCTTTTCATATTGGT
TTCCCTTCCTGGACTTCCAACATTTTTAATCTTTTAAATTGCTTTCCTTT
GGAAAGTGATCTTGGCTCCAACATTCTTAACTGTACACACCTAGAAACTT
TAAAGGTTCCTTTGCTGTTTTGTTTTTTTTGTCTTTTAATACAGACTTAC
CATACTGTATACTCCTGAAGTTTAAGGCTGAACCTACTGCTCTAAGCCTT
TTTTTCTTTTTATCTTGCATCATGAGTAGAACATTTTGTCATTTTGTCTT
GCATTATAAATAGTAAGAGGAGTCACCATCAGAGTAGCAGCTGTGAGGTT
AGCTCATGCCCTAAGCCAAGAGGTTCTTCAAAGCCATTTGTCTCTGAGGC
AACTGTTAATTTTGTCGTAGATTCCTAGAAACTGACCTGACAGCAACTCT
ACAAATAGAAGCTCTTTTAGGAACCTCTTACCCTGACAAAGCAGCTCTGC
TTTCCTGCATTTTGTGTGTCAACTGTTCCTTCTATGACCAATAAAATTAT
CAAGACAGTGGGGTGTTCACTCATTTCTGCTCTGAGACCTGGGGAAGCGC
TTTAAAAGATAATCCCGTAGCTATGAAAATACTTGGAGGAAAAAAATGCC
TTCCTTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCCTCTT
TCTTTCTTTCTTTCTTTCCTTCCGCAGGTTCCCCCGAATTCCCAATTTGT
CCAGTCTTGCAGTTTGTATTAACTATTAAAGCCCTTAAGGGTTTTTATTT
ACCACTACCTACTTTTTTTATTAACGGAATAACACTACAACTTCTTCTTT
GTATTACAAATGATGTTATGTAAAAATACCTCCCCGAACTCTCTTGATGT
AACCTAATCCGGTATCCTATATTTCTTTCCTCTAAACAACCAACCCTTTT
CTCCAAATTCTAACCCCCCCTGCGCCTCTTACACCCTGCCATGGTTCCTT
CTCATTACTCGTGGTTCTTTCTGCACCAATTTCTCCACCTCACATTTGGC
CTCCCCTCTCTTAAATACTTCTTAGACATTACACCCTTACTATTTCTTAC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_g01.g1 MSMg01no332_g01.g1 CHROMAT_FILE:
MSMg01no332_g01.g1 PHD_FILE: MSMg01no332_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:45 2005
         (503 letters)



>mm_chr17_85485650_85486551
          Length = 902

 Score =  862 bits (446), Expect = 0.0
 Identities = 488/502 (97%), Gaps = 1/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttcatattggtttcccttcctggacttccaacatttttaatcttttaaattgctttc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cttttcatattggttccccttcctggacttccaacatttttaatcttttaaattgctttc 642

                                                                       
Query: 61  ctttggaaagtgatcttggctccaacattcttaactgtacacacctagaaactttaaagg 120
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 641 ctttggaaagtggtcttggctccatcattcttaactgtacacacctagaaactttaaagg 582

                                                                       
Query: 121 ttcctttgctgttttgttttttttgtcttttaatacagacttaccatactgtatactcct 180
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 581 ttcctttgctgttttg-tttttttgtcttttaatatagacttaccatactgtatactcct 523

                                                                       
Query: 181 gaagtttaaggctgaacctactgctctaagcctttttttctttttatcttgcatcatgag 240
           |||||||||||||||||||||||||||||||||||   ||  ||||||||||||||||||
Sbjct: 522 gaagtttaaggctgaacctactgctctaagcctttgagtcggtttatcttgcatcatgag 463

                                                                       
Query: 241 tagaacattttgtcattttgtcttgcattataaatagtaagaggagtcaccatcagagta 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 462 tagaacattttgtcattttgtcttggattataaatagtaagaggagtcaccatcagagta 403

                                                                       
Query: 301 gcagctgtgaggttagctcatgccctaagccaagaggttcttcaaagccatttgtctctg 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcagctgtgaggttagcttatgccctaagccaagaggttcttcaaagccatttgtctctg 343

                                                                       
Query: 361 aggcaactgttaattttgtcgtagattcctagaaactgacctgacagcaactctacaaat 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggcaactgttaattttgtcatagattcctagaaactgacctgacagcaactctacaaat 283

                                                                       
Query: 421 agaagctcttttaggaacctcttaccctgacaaagcagctctgctttcctgcattttgtg 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 282 agaagctcttttaggaacctcttcccctgacaaagcagctctgctttcctgcattttgtg 223

                                 
Query: 481 tgtcaactgttccttctatgac 502
           ||||||||||||||||||||||
Sbjct: 222 tgtcaactgttccttctatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 902
Length adjustment: 10
Effective length of query: 493
Effective length of database: 892
Effective search space:   439756
Effective search space used:   439756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)