BAC Information

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BAC

Clone NameMSMg01-332N02
Chromosome17 (Build37)
Map Location 52,967,709 - 52,968,437
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332N02.T7 (MSMg01no332_n02.b1)MSMg01-332N02.TJ (MSMg01no332_n02.g1)
ACCAG448746AG448747
length1,2581,243
length of high quality
(start - end)
412 (99 - 510)729 (82 - 810)
definitionCHROMAT_FILE: MSMg01no332_n02.b1 PHD_FILE: MSMg01no332_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:41 2005CHROMAT_FILE: MSMg01no332_n02.g1 PHD_FILE: MSMg01no332_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCATTTTTNNNNNNNCCATTGGGCGCTATAGACTCCTATAGGGAGA
GGATCCGCGGAATTCCAGGGATCAATCCCATACTTCATACTCCCACGCTG
ACGCCAATGCATACACTAGCAAGCTTTGGCTGAAAGGACCCTGATATAGC
TGTCTCTTTTTTTTTTTTTTTTTCTTTTCCATTTTTTATTAGGTATTTCG
CTCATTTACATTTGCAATGCTATACCAAAAGTCCCCCATAGCCACCCACC
CCCTCTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCCCCTG
TACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGA
TGGCCGACTAGGCCATCTTTTGATGCATATGCAGCTAGAGTCAAGAGCTC
CGGGGTACTGGTTATTTCATAATGTTGTTCCACCTATAGGGTTGCAGATC
CCTTTAGCTTCTTTGGGACTTTCTCTAGCTCCTTCATTGGGGGCCATGTG
ATCCATCCAATATCCGACTGTGAGCATCCACTTCTATGTTTGCTAGGCCC
AGGCCTACTCTGACCAGAGACAGCTTTATCCGGGCCCTTTCTGCATAATC
TTGCCTAGGGTTGCAATGGGGTCCACATTTGCATGTTGATCCAGCCCTGG
CTCTCCCGAAATGGGGATACCTACGGGGTCCATCCTTTTTTCCCCAGCCC
AATATTTGTCCCCGCTAATCCTCCCCACGAGGGTTTGCCCCCACTTCTAC
CGAGCGGCAAANGGCCCAACGCTGANTTATCCTTCTCCCCCTCTCTATCG
GGGNTNTAAANTGTTTTCCCCATTCTGGNNTTTNTTGGTCCGCTGGTCTC
TTCCCTTCTNNNNCGGTTTTTTTTTTTGTGGNNTTTTTCCNTTGNNCNNC
NNCNNNCTTTTTTCCTCTCCCCCCNNTCCNNTTTNCNNCCTTTNNNNNNC
CCCTCCCTTTTCNNNNTNGNNTTNTNNNNNCCTTTTCCNCCCCCTNNNCC
TCTTNTTANNNNNNNTTGGTTCTCTNGGNCCTTTCTCNNCGTTNTTTTCN
TTTTTCCCTCTCCCNCCCNCTNTNNNNNNNNTGGGTTTTCNTTCCTTTTN
TNNNNTTCCCCNCCCTNNNTCCTTNCGCCCTCTCTTTCTCCNNCNNNNCT
TCNNTCTNNTCTCNTCCNNNNNCNCTTCTTTCTNCNNNCNCCNNCCNTTT
TTCTCCNNTTTCTNNNNNCCTNNNNCCCNNCNNNNNCTTTTCTTTNNNTT
TTCTCCCA
NNGGATTTATTNNNNNAACATGGAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCCCACGGTGATGAAA
GGAAACAAAGAAGCCAGCTGTGAAACCTAGCCTTGCCACTACAAGCGATC
TTCACAGATGATCTGAGTTTGGAACTCATGGTTCCAAGCACATCACTGAC
ACATTGATGGCTTTACAGTGACCTCATGGGGCAAAAAAACAGTGAACACA
TATGAAGTAGCAAAAACAGCCCTACCACAAAATAATGATTCAGTAAATGC
TGGTTATTATTAGTTTTTTATTGGCATGGTAGCAAAACTATATAGTGTGT
TCCAGATCTATAAAATAGAAACAGAAGTAACTAAGAACAAGTTAGGCAAC
TCTGATAAGCCACTCCTAGCTCCTGTGTCTTCATTTAGAAGCCTTTAAGT
ACAGCAACAGTGACTGGGGACATGTGGACTGATGTCAACAACAAGGAATT
TGACTACTGTTTCCATACTATCTGCCACACCACTGTATGGTCATTAAGAA
ATTCTTAGCAGTCCAGTCCAGGTATGCTAGGGTCACTGTCATCACAAGCA
CAGTCAGTATCCCACTGGGATATAGCAAAAGTTTGTGACCCAAACCTGCA
CCATGTTCCCAGGGAGTCAGGTATGGTCTCTGTCCAGTGGGTGCTGGGAG
TTTAACACAGATCCTTTAGATGGGAAATCAATGTTCTTAACATTTGTGCC
ACCTCTACAGCCTCAATTAATGTATTTTAAATTAAAAATCAATGTCTAAT
TTTGTTTTAAACATCACTGAANAGGTAAGTTATAGAGGGCCCAAATCAGT
ATTTTGTGCATGATACACAAGTCTTTTGATATGGTAGACTTACATAATAC
AGTGACAGCCATGTACAATGTCAGGCTAATACAAATGAATAGTAATGATA
ATAAGAGCAGAATTATAATAGTGATGTACTAAATATTTTAAATGTCTACT
TTAACCCCACCTAAAGTTAACTGAAAATACTTCCCTGTGCTTATAAGAAG
CTTATAAAGATGTAATGCCCCCAGATCCTGAGAAAAAAAAAACCTGTGAA
AAAAACAAGGCCGGCTCGCTTTATGAGAATTGCTTTTTCTTTAAACCCAA
AATCTCCTCGGGGGGAAAACCTGGGCCCTCTCGAACACTTTTTAATTTTA
ACCCTTGAAGGAACCTTTCCTTGTAAGGTTCCGCACCCCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_n02.g1 MSMg01no332_n02.g1 CHROMAT_FILE:
MSMg01no332_n02.g1 PHD_FILE: MSMg01no332_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:41 2005
         (729 letters)



>mm_chr17_52967509_52968637
          Length = 1129

 Score = 1386 bits (717), Expect = 0.0
 Identities = 726/729 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcccacggtgatgaaaggaaacaaagaagccagctgtgaaacctagccttgccacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcccacggtgatgaaaggaaacaaagaagccagctgtgaaacctagccttgccacta 260

                                                                       
Query: 61  caagcgatcttcacagatgatctgagtttggaactcatggttccaagcacatcactgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcgatcttcacagatgatctgagtttggaactcatggttccaagcacatcactgaca 320

                                                                       
Query: 121 cattgatggctttacagtgacctcatggggcaaaaaaacagtgaacacatatgaagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattgatggctttacagtgacctcatggggcaaaaaaacagtgaacacatatgaagtagc 380

                                                                       
Query: 181 aaaaacagccctaccacaaaataatgattcagtaaatgctggttattattagttttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaacagccctaccacaaaataatgattcagtaaatgctggttattattagttttttat 440

                                                                       
Query: 241 tggcatggtagcaaaactatatagtgtgttccagatctataaaatagaaacagaagtaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcatggtagcaaaactatatagtgtgttccagatctataaaatagaaacagaagtaac 500

                                                                       
Query: 301 taagaacaagttaggcaactctgataagccactcctagctcctgtgtcttcatttagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagaacaagttaggcaactctgataagccactcctagctcctgtgtcttcatttagaag 560

                                                                       
Query: 361 cctttaagtacagcaacagtgactggggacatgtggactgatgtcaacaacaaggaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctttaagtacagcaacagtgactggggacatgtggactgatgtcaacaacaaggaattt 620

                                                                       
Query: 421 gactactgtttccatactatctgccacaccactgtatggtcattaagaaattcttagcag 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gactactgtttccatactatctgccacgccactgtatggtcattaagaaattcttagcag 680

                                                                       
Query: 481 tccagtccaggtatgctagggtcactgtcatcacaagcacagtcagtatcccactgggat 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 tccagtccaggtatgctagggtcactgtgatcacaagcacagtcagtatcccactgggat 740

                                                                       
Query: 541 atagcaaaagtttgtgacccaaacctgcaccatgttcccagggagtcaggtatggtctct 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagcaaaagtttgtgacccaaacctgcaccatgttcccagggagtcaggtatggtctct 800

                                                                       
Query: 601 gtccagtgggtgctgggagtttaacacagatcctttagatgggaaatcaatgttcttaac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtccagtgggtgctgggagtttaacacagatcctttagatgggaaatcaatgttcttaac 860

                                                                       
Query: 661 atttgtgccacctctacagcctcaattaatgtattttaaattaaaaatcaatgtctaatt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 atttgtgccacctctacagcctcaattaatgtattttaaattaaaaatcaatgtctaatt 920

                    
Query: 721 ttgttttaa 729
           |||||||||
Sbjct: 921 ttgttttaa 929


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)