Query= MSMg01no333_i13.b1 MSMg01no333_i13.b1 CHROMAT_FILE:
MSMg01no333_i13.b1 PHD_FILE: MSMg01no333_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:44 2005
(706 letters)
>mm_chr17_91018452_91019557
Length = 1106
Score = 1100 bits (569), Expect = 0.0
Identities = 603/615 (98%), Gaps = 3/615 (0%)
Strand = Plus / Minus
Query: 5 gaattcctaaatattttctctctgatctttaaccccaatgcaatttcaagtatgcatcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaattcctaaatattttctctctgatctttaaccccaatgcaatttcaagtatgcatcac 556
Query: 65 ctcctattcaatcattctcttgaatgcctggctgaaaagtaattttataagtttaataga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctcctattcaatcattctcttgaatgcctggctgaaaagtaattttataagtttaataga 496
Query: 125 cctaattctctaggcctggtgcctgagtgtggagaagtgcagacagatgaagttatatcc 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cctgattctctaggcctggtgcctgagtgtggagaagtgcagacagatgaagttatatcc 436
Query: 185 acagagtgctatcctcaaaggtggatttgtaccttaacctaatggtagactactgattcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acagagtgctatcctcaaaggtggatttgtaccttaacctaatggtagactactgattcc 376
Query: 245 tgctgaattggagaaaattcttgtgatgaaaatactcatttcttgagatctactttaggt 304
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 375 tgctgaattggagaaaattcttgtggtgagaatactcatttcttgagatctactttaggt 316
Query: 305 agtcctttcattttatttttactaagaactgaaataaaactttcacttttaaacttataa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agtcctttcattttatttttactaagaactgaaataaaactttcacttttaaacttataa 256
Query: 365 aaggaaaatgtgcactttgacaattattcctattcactgagtcaaatatgattcttgctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaggaaaatgtgcactttgacaattattcctattcactgagtcaaatatgattcttgctt 196
Query: 425 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 136
Query: 485 cctcttcctcttc--ct-cttcctcttcctcttcctcttcctcttcctcttcctcttcct 541
| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cttcttcttcttcttcttcttcctcttcctcttcctcttcctcttcctcttcctcttcct 76
Query: 542 cttcctcttcctcttcctcttcctcttcctcttcctcttcctcttcttcttcttcttctt 601
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 75 cttcctcttcctcttcctcttcctcttcctcttcctcttcctcttcctcttcctcttcct 16
Query: 602 cttcttcttcttctt 616
|||| ||||||||||
Sbjct: 15 cttcctcttcttctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 83
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no333_i13.g1 MSMg01no333_i13.g1 CHROMAT_FILE:
MSMg01no333_i13.g1 PHD_FILE: MSMg01no333_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:44 2005
(452 letters)
>mm_chr17_90850114_90850963
Length = 850
Score = 789 bits (408), Expect = 0.0
Identities = 434/452 (96%), Gaps = 16/452 (3%)
Strand = Plus / Plus
Query: 1 tactccaaaagaccagccatgaagccacatggagaacactctctacctctgagatcatac 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactccaaaagacc--ccatgaagccacatggagaacactctctacctctgagatcatac 258
Query: 61 aatcactttgggctatggggtcacaaatctctgactgtaatctctttttcactctgatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatcactttgggctatggggtcacaaatctctgactgtaatctctttttcactctgatca 318
Query: 121 gagattggctctatttcttggcccatctctgacacgacatgtctcagtagcctcgcacat 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 319 gagattggctctatttcttggcccatctttgacacgacatgtctcagtagcctcgcaca- 377
Query: 181 acacacacacacacacacacacacacacacacacacacacacacacaaaagatatttaag 240
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 -------------cacacacacacacacacacacacacacacacacaaaagatatttaag 424
Query: 241 ctccctttagaactttgtcatatgccttgaaagtactttggaagaatatgttacaaattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctccctttagaactttgtcatatgccttgaaagtactttggaagaatatgttacaaattc 484
Query: 301 cagctatgaattttatctttatttaatgtcattgagttcccttaaacacaaacctagctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cagctatgaattttatctttatttaatgtcattgagttcccttaaacacaaacctagctt 544
Query: 361 taaaattcgttcacttctccccttgaagaaaccattttgctctttaatagtataagctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taaaattcgttcacttctccccttgaagaaaccattttgctctttaatagtataagctca 604
Query: 421 tcacagtgatataatttccagagttcatattt 452
||||||| ||||||||||||||||||||||||
Sbjct: 605 tcacagtaatataatttccagagttcatattt 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 850
Length adjustment: 10
Effective length of query: 442
Effective length of database: 840
Effective search space: 371280
Effective search space used: 371280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
