Query= MSMg01no335_b19.b1 MSMg01no335_b19.b1 CHROMAT_FILE:
MSMg01no335_b19.b1 PHD_FILE: MSMg01no335_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:45 2005
(560 letters)
>mm_chr17_79634156_79635115
Length = 960
Score = 1083 bits (560), Expect = 0.0
Identities = 560/560 (100%)
Strand = Plus / Plus
Query: 1 tggccttgaactcagaaatccgactgcctctgcctcccaagtgctgggattaaagacgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggccttgaactcagaaatccgactgcctctgcctcccaagtgctgggattaaagacgtt 260
Query: 61 cgacaccactgcccagctcacatgttctttctcatgggtgggtatcaggttctagttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgacaccactgcccagctcacatgttctttctcatgggtgggtatcaggttctagttttc 320
Query: 121 atatctgagtatttattttggagcgggtgtgggtagaggtccagaaaaatgaaaaggact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatctgagtatttattttggagcgggtgtgggtagaggtccagaaaaatgaaaaggact 380
Query: 181 acaagagacagggtgggaggggcttcagtggggtgcagaggacaatgggacagggtggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagagacagggtgggaggggcttcagtggggtgcagaggacaatgggacagggtggga 440
Query: 241 ggagcttcaatggggcacagaggacaatgggacagggtgggaagggcttcagtggctgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcttcaatggggcacagaggacaatgggacagggtgggaagggcttcagtggctgga 500
Query: 301 aaggactatgggacccacatgctataaaatagaagaggttgaaatagtggctgcagagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggactatgggacccacatgctataaaatagaagaggttgaaatagtggctgcagagct 560
Query: 361 gtgagcaagggtggagacgcagcagtgggaaggctgcatgagggctggggtaggacagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgagcaagggtggagacgcagcagtgggaaggctgcatgagggctggggtaggacagtg 620
Query: 421 agaaagatcaggcaaagtatgtcccaggtccaaaccaacaggccagtgaatcctggctaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaagatcaggcaaagtatgtcccaggtccaaaccaacaggccagtgaatcctggctaa 680
Query: 481 gcctctgaaactgtaaagccacgggaaacctccaagtgagcaaaacttctcaggtatttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctctgaaactgtaaagccacgggaaacctccaagtgagcaaaacttctcaggtatttc 740
Query: 541 actatgacaaaagtcgaatg 560
||||||||||||||||||||
Sbjct: 741 actatgacaaaagtcgaatg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_b19.g1 MSMg01no335_b19.g1 CHROMAT_FILE:
MSMg01no335_b19.g1 PHD_FILE: MSMg01no335_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:45 2005
(495 letters)
>mm_chr17_79824583_79825478
Length = 896
Score = 951 bits (492), Expect = 0.0
Identities = 495/496 (99%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 1 attctc-aaatatgcccatttgctctgctgttatgacattccccctcacttttaactcat 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 attctcaaaatatgcccatttgctctgctgttatgacattccccctcacttttaactcat 637
Query: 60 acttcttcaacaaattgtacttgggcaaacactcagcactggtcagataatattttttat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acttcttcaacaaattgtacttgggcaaacactcagcactggtcagataatattttttat 577
Query: 120 ttcaaaacgtcaaagagctctttgccatagtgttttataaaccataggattatttgatta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttcaaaacgtcaaagagctctttgccatagtgttttataaaccataggattatttgatta 517
Query: 180 tttaaagttgggagaagcattgagatgcccatgactcctgacttccctaaggagtgttaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttaaagttgggagaagcattgagatgcccatgactcctgacttccctaaggagtgttaa 457
Query: 240 ctgaataaatgagtagctgtggtgctcagcccggcctggatatcatttttgcccactggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctgaataaatgagtagctgtggtgctcagcccggcctggatatcatttttgcccactggt 397
Query: 300 ctgtgacatgagagaagtcaacagagaaaatgtgacttgaaggccacttcctgtttctga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgtgacatgagagaagtcaacagagaaaatgtgacttgaaggccacttcctgtttctga 337
Query: 360 gaccttaaagcagtggagaaccttagacatgaggatcagaagtagagactgagattaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaccttaaagcagtggagaaccttagacatgaggatcagaagtagagactgagattaaag 277
Query: 420 tgctatctcattgctaactccctaaaggagtttcccgagatatctgtgggagggttacag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgctatctcattgctaactccctaaaggagtttcccgagatatctgtgggagggttacag 217
Query: 480 agagagggaggatgtt 495
||||||||||||||||
Sbjct: 216 agagagggaggatgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space: 429710
Effective search space used: 429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
