BAC Information

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BAC

Clone NameMSMg01-335L02
Chromosome17 (Build37)
Map Location 24,903,250 - 25,050,954
singlet/doubletdoublet
Overlap gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3
Upstream gene2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream geneHn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335L02.T7 (MSMg01no335_l02.b1)MSMg01-335L02.TJ (MSMg01no335_l02.g1)
ACCAG450889AG450890
length723726
length of high quality
(start - end)		522 (62 - 583)519 (72 - 590)
definitionCHROMAT_FILE: MSMg01no335_l02.b1 PHD_FILE: MSMg01no335_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:32 2005CHROMAT_FILE: MSMg01no335_l02.g1 PHD_FILE: MSMg01no335_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,903,250 - 24,903,771)(25,050,436 - 25,050,954)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TTCCTTATCCGGGAGCAGCTCCCAGGCAGGCCTCGCTGATGAGATGTGTT
CTTCAAAGGGAGGGAGTCTCCATTCTGGAGAGGTGAAAAGGTTCCAGGAC
TTGCAGCGGCCATGCTGGAGCGCTAGCGTGAGTGTACTAAGTGCAGTGTG
ACTATCGCCTGTATAAAAGTAAATAAAAGGAGCAGAAGGTGGTGGAGAGG
AATCTTCTGGCCCTGCAGGAAGCAATCCGCTGACTGAGGACTGGGGGAGG
GGCACCAGGCAGTTCCTATGAGCTGAAAGAGGCTCAGGACTATCAGCTAT
CAGGTACAAAGGGACGCAGCAGGGCTTATGATACAAGGGATCAAATTCTT
CCCTCGACTGAGGGAGTTTTGAAGAGAGCCACAAGTCTCAGAGTCATAGC
CTGGCCAACTGGATTGCAGCCTTGTGAAACCCGAGGCAGAGAGCATTGCT
CAGCCATCCAGAACTCATGACCTCGGCAACCTGGGAGAGCAAATGGGATC
TGGATTGAACTGCCGAAATTCTGGTCATTTGTTATACAGCACAGAAAATA
TAACAATATAATAATTCAACCAGCGGAAGAGTGTTCTGGAAAAACGAGCA
AGTCTTTCAGCGATGACGTATGCAGAGTATTCCGGAAAGTCTTGGATGGC
GAATCCTTTCCTAACGGCAGTTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGGAGTTCAAGACTAGCCTAGGGTGTAT
GAGACTATCGAGAGAGAGAGAGAGACAGATAGACAGACGGACAGACAGAC
AGACAGAGAGAGACAGACCCAGTTACCAAAAGAAAAAACCCAGTTTTGAA
ACTTACACAGGGCCATAGGGGGTGGGATCCTCCCTCAGCAATGCATACCT
ATTTGTTATAGGCCTTCCTCCCTAGACTCCCATAGTACTGGAGTCTCCAC
CCACCTGGCCAATATGGGGAGAACTCTTGACAGTCATATCTGGTGGAAGC
TAGTGTGGAGTCTATAGATGCAGGCCTGGGAAGTCTTTGTGAATAGGGCA
GATTTTCAGGCTATCTGCTAACACAAGGTTTCCTGTGTTCTGTACTAGGC
ATGGGCAGCAGTGACGAGTGGTCCGATGTTCAGGACATTATCGACTCCAC
CCCAGAGCTGGATGTGTGTCCTGAAACCCGTCTGGAGCGCACAGGAAGCA
GGTGCTCATTCAGCCAGGCTCTGGATGAGGGATTCAGTGTGCTTTGGGCA
GGGGGTGTATCACTGTCATACCCCGGCCGTGTCTGTACCCACATTGCAGG
GTTGCCACTGAACAGGTTTATCACCCCGCCCCTTATTCCTGTGGAAACAC
AACCTGAAACCCCTTACAAAGGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_l02.b1 MSMg01no335_l02.b1 CHROMAT_FILE:
MSMg01no335_l02.b1 PHD_FILE: MSMg01no335_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:32 2005
         (522 letters)



>mm_chr17_24903050_24903971
          Length = 922

 Score = 1002 bits (518), Expect = 0.0
 Identities = 521/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagcagctcccaggcaggcctcgctgatgagatgtgttcttcaaagggagggagtctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagcagctcccaggcaggcctcgctgatgagatgtgttcttcaaagggagggagtctcc 260

                                                                       
Query: 61  attctggagaggtgaaaaggttccaggacttgcagcggccatgctggagcgctagcgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctggagaggtgaaaaggttccaggacttgcagcggccatgctggagcgctagcgtga 320

                                                                       
Query: 121 gtgtactaagtgcagtgtgactatcgcctgtataaaagtaaataaaaggagcagaaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtactaagtgcagtgtgactatcgcctgtataaaagtaaataaaaggagcagaaggtg 380

                                                                       
Query: 181 gtggagaggaatcttctggccctgcaggaagcaatccgctgactgaggactgggggaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggagaggaatcttctggccctgcaggaagcaatccgctgactgaggactgggggaggg 440

                                                                       
Query: 241 gcaccaggcagttcctatgagctgaaagaggctcaggactatcagctatcaggtacaaag 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaccaggcagctcctatgagctgaaagaggctcaggactatcagctatcaggtacaaag 500

                                                                       
Query: 301 ggacgcagcagggcttatgatacaagggatcaaattcttccctcgactgagggagttttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacgcagcagggcttatgatacaagggatcaaattcttccctcgactgagggagttttg 560

                                                                       
Query: 361 aagagagccacaagtctcagagtcatagcctggccaactggattgcagccttgtgaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagagagccacaagtctcagagtcatagcctggccaactggattgcagccttgtgaaacc 620

                                                                       
Query: 421 cgaggcagagagcattgctcagccatccagaactcatgacctcggcaacctgggagagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgaggcagagagcattgctcagccatccagaactcatgacctcggcaacctgggagagca 680

                                                     
Query: 481 aatgggatctggattgaactgccgaaattctggtcatttgtt 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgggatctggattgaactgccgaaattctggtcatttgtt 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no335_l02.g1 MSMg01no335_l02.g1 CHROMAT_FILE:
MSMg01no335_l02.g1 PHD_FILE: MSMg01no335_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:32 2005
         (519 letters)



>mm_chr17_25050146_25051064
          Length = 919

 Score =  996 bits (515), Expect = 0.0
 Identities = 518/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggagttcaagactagcctagggtgtatgagactatcgagagagagagagagacagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agggagttcaagactagcctagggtgtatgagactatcgagagagagagagagacagata 750

                                                                       
Query: 61  gacagacggacagacagacagacagagagagacagacccagttaccaaaagaaaaaaccc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 749 gacagacggacagacagacagagagagagagacagacccagttaccaaaagaaaaaaccc 690

                                                                       
Query: 121 agttttgaaacttacacagggccatagggggtgggatcctccctcagcaatgcataccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agttttgaaacttacacagggccatagggggtgggatcctccctcagcaatgcataccta 630

                                                                       
Query: 181 tttgttataggccttcctccctagactcccatagtactggagtctccacccacctggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tttgttataggccttcctccctagactcccatagtactggagtctccacccacctggcca 570

                                                                       
Query: 241 atatggggagaactcttgacagtcatatctggtggaagctagtgtggagtctatagatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atatggggagaactcttgacagtcatatctggtggaagctagtgtggagtctatagatgc 510

                                                                       
Query: 301 aggcctgggaagtctttgtgaatagggcagattttcaggctatctgctaacacaaggttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggcctgggaagtctttgtgaatagggcagattttcaggctatctgctaacacaaggttt 450

                                                                       
Query: 361 cctgtgttctgtactaggcatgggcagcagtgacgagtggtccgatgttcaggacattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctgtgttctgtactaggcatgggcagcagtgacgagtggtccgatgttcaggacattat 390

                                                                       
Query: 421 cgactccaccccagagctggatgtgtgtcctgaaacccgtctggagcgcacaggaagcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgactccaccccagagctggatgtgtgtcctgaaacccgtctggagcgcacaggaagcag 330

                                                  
Query: 481 gtgctcattcagccaggctctggatgagggattcagtgt 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtgctcattcagccaggctctggatgagggattcagtgt 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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