Query= MSMg01no336_a04.b1 MSMg01no336_a04.b1 CHROMAT_FILE:
MSMg01no336_a04.b1 PHD_FILE: MSMg01no336_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:58 2005
(509 letters)
>mm_chr17_85357584_85358492
Length = 909
Score = 928 bits (480), Expect = 0.0
Identities = 498/504 (98%)
Strand = Plus / Minus
Query: 5 ggaattcatgtaattttcagatggagttcatagtaatttcatttaagaagcccattgtta 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggaattcatgtaaacttgagatggagttcatagtaatttcatttaagaagcccattgtta 649
Query: 65 agcacgacacccgaaattttcggaccgtggttggtgggcaacacacagacacgaaccccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agcacgacacccgaaattttcggaccgtggttggtgggcaacacacagacacgaaccccc 589
Query: 125 gagtctggctaagaggagcaagacaaacggtttaaagcacaggagggggaaggaggcccg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gagtctggctaagaggagcaagacaaacggtttaaagcacaggagggggaaggaggcccg 529
Query: 185 gagaggcacaaacagaaaaaccagaaagatttcacaagaaaggagagcggagcgcagggg 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gagaggcacagacagaaaaaccagaaagatttcacaagaaaggagagcggagcgcagggg 469
Query: 245 agggcagaaagcgaccgggagagagagccacaccgaaaggtgttttccggagcggcgggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agggcagaaagcgaccgggagagagagccacaccgaaaggtgttttccggagcggcgggc 409
Query: 305 aggactgggtgagccgcggccttggggtggcccgcgcgcccatgggcgctgcctgcacgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aggactgggtgagccgcggccttggggtggcccgcgcgcccatgggcgctgcctgcacgc 349
Query: 365 cgcggcgcgaggggaagcagcggacttccacgcgccccggcaaactactccctcgccgcg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cgcggcgcgaggggaagcagcggacttccacgcgccccggcaaactactccctcgccgcg 289
Query: 425 ccgcgccccgcgaagcctcgcgcgcaagcggaggcggcggcggcagcccaggccccgggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 ccgcgccccgcgaagcctcgcgcgcaagcggaggcggcggcggcagcccaggccctgggc 229
Query: 485 ctagtccggtgctccgagagcagg 508
|||| |||||||||||||||||||
Sbjct: 228 ctagcccggtgctccgagagcagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_a04.g1 MSMg01no336_a04.g1 CHROMAT_FILE:
MSMg01no336_a04.g1 PHD_FILE: MSMg01no336_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:58 2005
(410 letters)
>mm_chr17_85151816_85152620
Length = 805
Score = 719 bits (372), Expect = 0.0
Identities = 399/410 (97%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 1 tcattagaagcagtgaaaaaaaaaaaaaaaaacccaacaaagtcagatactacttacttt 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcattagaagcagtgaaaaaaaaaaaaaa----ccaacaaagtcagatactacttacttt 256
Query: 61 nttgagaatctaccttctctctgtcaaccagaaccttaatatcctaaaattgggaatcaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 -ttgagaatctaccttctctctgtcaaccagaaccttaatatcctaaaattgggaatcaa 315
Query: 121 attagtacagaattagaaaaaataggggaaaatatgttagtgaatattaaaggcaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 attagtacagaattagaaaaaataggggaaaatatgttagtgaatattaaaggcaaattt 375
Query: 181 tacaagcccccacctcactttaatgctacctttctaaatttttgcaggaatcctattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tacaagcccccacctcactttaatgctacctttctaaatttttgcaggaatcctattcat 435
Query: 241 attgttttaatcactgtaatgttttagatgtaccctttaatatataaacagtttctacca 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attgcattaatcactgtaatgttttagatgtaccctttaatatataaacagtttctacca 495
Query: 301 gcaatcaataaaagctttatttttatggctgtttttggaacagaaaaaatttgacccttc 360
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct: 496 gcaatcaataaaagctttatttttatggttgttttttgaacagaaaaattttgacccttc 555
Query: 361 acgttaaatttaagtaacatttaaaaaagtctctacatataaatgaagca 410
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aagttaaatttaagtaacatttaaaaaagtctctacatataaatgaagca 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 805
Length adjustment: 9
Effective length of query: 401
Effective length of database: 796
Effective search space: 319196
Effective search space used: 319196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
