BAC Information

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BAC

Clone NameMSMg01-338H15
Chromosome17 (Build37)
Map Location 75,834,574 - 75,834,787
singlet/doubletsinglet
Overlap genenone
Upstream geneNlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1, EG621988
Downstream geneRasgrp3, 2810405J04Rik, LOC668787, LOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338H15.T7 (MSMg01no338_h15.b1)MSMg01-338H15.TJ (MSMg01no338_h15.g1)
ACCAG452995AG452996
length756720
length of high quality
(start - end)
214 (66 - 279)---
definitionCHROMAT_FILE: MSMg01no338_h15.b1 PHD_FILE: MSMg01no338_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:07 2005CHROMAT_FILE: MSMg01no338_h15.g1 PHD_FILE: MSMg01no338_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAAATATATCATTTTCTGTGTAAACTACCACGAGCAGATTCACACT
GCATCCTTCATTTCCTGAAAGACAAATTTGTGGGAGTGGGGGGGGGTGCC
TGAACACCAGGAGGAAGACCTGGTTCTGTTCTGTTCTTTTGCTTTCTGTC
TTATTTTTTCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTTTCCTTCC
CTTCTTCCCTTCCCTTCCCTTCCCTTACCTTACCTTACCTTACCTTACCT
TACCTTACCTTTTTTTTTTTTTCCTTACCTTACCCTACCCTACCTTACCT
TACCTTTTTTTTCCCCCCCCTTTTTTACTATACTTTTTTTATATCTTTTT
TTTTTTCTTTTCCCACCTTTTTTCTCCTTTTTTTACCACTCCTTTTTAAC
TAAAATACCTCAAACTTCTCTCTCTTATTATACCCTCACACCTCTATTCT
TTTTCCCCTTTCCAATATAATTTTCTTTTCTTCATTCCTTTTTATTTCTT
TTATATATCTCTTTTTTTTCTCCTTCTTCTTTCTCTTTTCCTTTACTTCC
TCCCTTCCTCTATTATTATTACTACTTTCTCCTTTCTTCCTTCCCCTCCC
TTTTCTTTTTTTTTTTTCCTTCCCATCCTTTCTCTTTTTTCTTTTTTCCC
CTCCCTCTTTTTTCCCTCTCTTTTTTTCCCCCTTCTCTCCTCCTCTCCTC
TCTTCT
ACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATACTTCCAAAGTTGGGTTTCGATGAAACT
GTCCCTGTGAGGGAATCTACTGTCAAGGCTGGNAAGAAATACAAAGGCCA
GAATAAGNNCAGAGTACNCTGGCTGCCAGGAAAGGCCTTTCCGCAAGTAA
ACCAGNAGCCAGATGTTGCTAACGGGAGGAAAACCTTGAGATGGCCCTAA
GAGGGGCCTGACCCCCGGGCCGNTGCTGATTGAGAAAACCCCAAACTTTT
TTTAACACTCGGGGGGGCGGGGGGGGGGGGCGGGGGAGGTGCGGGGCGGG
GGGCGGGGGGGCGGGGGGGGGGCGGGGGGGGCCGGCGGGGGGGGGCGGGG
GGGGGGCGGGAGGGGTGCGGCGAGGGGAGGGGGGGCGGGTCGCCCCCTNC
CCCGAAAGNATCTGGGNNNCCCCCTATAANGGTGTTATAAAAGCACCACG
CAACGNNGTCTTNNNATTCTCATTGANNNGGTTTTTTTTNTNNNNTATTT
TTATTTTTTATAGAAGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGCCCCN
NNANNNNNNNNNNNNNNNNNNNNNNNNNANNNANNNNNNTCCCNNNTTGC
GCCCNNACTNNAANNTTTATTCTTCCTTCTCTTATTTTTNNNNNTAATAT
TATTTTTTTCTCACCCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_h15.b1 MSMg01no338_h15.b1 CHROMAT_FILE:
MSMg01no338_h15.b1 PHD_FILE: MSMg01no338_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:07 2005
         (214 letters)



>mm_chr17_75834446_75835060
          Length = 615

 Score =  317 bits (164), Expect = 3e-91
 Identities = 201/214 (93%), Gaps = 3/214 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctgtgtaaactaccacgagcagattcacactgcatccttcatttcctgaaagacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttttctgtgtaaactaccacgagcagattcacactgcatccttcatttcctgaaagacaa 283

                                                                       
Query: 61  atttgtgggagt-gggggggggtgcctgaacaccaggaggaagacctggttctgttctgt 119
           |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 282 atttgtgggagtggggggggggtgcctgaataccaggaggaagacctggttctgttctgt 223

                                                                       
Query: 120 tcttttgctttctgtcttattttttcctttcctttcctttccttcccttcccttcccttt 179
           ||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||
Sbjct: 222 tcttttgctttctgtcttatttttttctttcctttcctttcctttcctttcctttccttt 163

                                             
Query: 180 ccttccctt--cttcccttcccttcccttccctt 211
           |||| ||||  ||| |||| |||| |||| ||||
Sbjct: 162 cctttcctttcctttcctttcctttcctttcctt 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 615
Length adjustment: 9
Effective length of query: 205
Effective length of database: 606
Effective search space:   124230
Effective search space used:   124230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)