XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTC
TGTTGGCAAATACACAAATAAGAGTTTAATAAAATGTATTAGCTTAAGTA
ACATTTGTATAAGAGGCAAGTCAGGAACAATGAAACTACATAGACCCCCA
TAATATCTCTTTCCTTTCTAGTGGTACTGTTAAAGATATTGTCACACATA
ATTATTTGTGTGGACATAACTTCTATTAATACTGTGGTTAAACTTTGTGT
CTCCAACACTGCTTACTAAAACTAAGATATCCTTTTTGATTGGTTTCAGT
GAAGACTTCCTTCTTGATGATGTTTTTTATTTTAACTTTGCCACTACCAT
CAATGCTCACTGAAGGCAGGGTAAGTTAAAATGGGTAATCATCTCTGAGC
TACCTAAATATTTGTGATTCATCACATTTCTTCATAGTACTTAAATCTAA
AGATTCTAATATGTTACAGAATTTTGGGGTAGTCTTGAATCTCTAATCAG
AACTATGATGATATCTGATTAAGTTTACACTGTTTCCCACTGACTAATAT
AATATACACCAGTGACAGATGACAACTAGCTACATGTTAATGTATGTACA
CTACAAATACATTCTACTAAACAGATCTCAAATTAGATATTTTAGGGGTT
TGAGATGGATATCATTTGCGAAGAATAAGAGTTGATTCCATTATGAAGCT
GCCTTTTGTTGAAAGTTCTCCCATGAATAAAGGGGGGGGAAAAATAACTT
T

NGGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTACACTGGGACATAGAGCCTTCA
CAGGAAGAAGGGCGTCTCCTCCCATTGATGACAGACTAGGCTATCTTCTG
CTACATATGCAAATGGAGCCATGAGTTCCACCATGTGTTTTATTTGGTTG
GTGGTTTAGTCCCTGGGAGCTCTGGGGGTACTGGTTAGTTCATATTGCTG
TTACTCCTATGAGGCTGCAAACCCCTTCATCTCCTTGGGTACTTTCTCTA
GCTCCTTCATTGCTGACTCTGTGCTCCATCCAATGGATGACTGTGAGCAT
CCACTTCTGTGTTTGTCAGGCACTGGCAGAGCCTCTCAGCAGACAGCTAT
ATAAGGTTCCTGTCATCAAGCACTTGTTTGTATCCACAATTGTGTCTGAG
TTTGGTGATTCTATATTGGATGGATCCCCAGGTTGGGCAGTCTCTGGATG
GTTATTCCTTCAGTCTCTGCTCAGATCAATGATTGTTTATGTCTGTTCTT
TTGATGTTGGTGGTAGAACTGTATGTGTTTGTATATGCCTCTGTGTGTGT
ATGTGCATATTTGTTTCTATTGGTTTTACTGGNATGNATTAATTATTACA
TGNGTTTTCCTGAGNTTATTTTAACTTCATTGGGGTAAGAATTTCCTTCT
AAAATCCTCTGGAGGACAGAGTTATTGGAAAAC

Query= MSMg01no338_o21.b1 MSMg01no338_o21.b1 CHROMAT_FILE:
MSMg01no338_o21.b1 PHD_FILE: MSMg01no338_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:40 2005
         (524 letters)



>mm_chr17_38555497_38556421
          Length = 925

 Score =  940 bits (486), Expect = 0.0
 Identities = 513/522 (98%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcctctgttggcaaatacacaaataagagtttaataaaatgtattagcttaag 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 725 ggaattctcctctgttggcaaatacacaaataagagtttaaaaaaatgtattagcttaag 666

                                                                       
Query: 64  taacatttgtataagaggcaagtcaggaacaatgaaactacatagacccccataatatct 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 665 taacatttgtataagaggcaagtcaggaacaatgaagctacatagacccccataatatct 606

                                                                       
Query: 124 ctttcctttctagtggtactgttaaagatattgtcacacataattatttgtgtggacata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctttcctttctagtggtactgttaaagatattgtcacacataattatttgtgtggacata 546

                                                                       
Query: 184 acttctattaatactgtggttaaactttgtgtctccaacactgcttactaaaactaagat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 acttctattaatactgtggttaaactttgtgtctccaacactgcttactgaaactaagat 486

                                                                       
Query: 244 atcctttttgattggtttcagtgaagacttccttcttgatgatgttttttattttaactt 303
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attctctttgattggtttcagtgaagacttccttcttgatgatgttttttattttaactt 426

                                                                       
Query: 304 tgccactaccatcaatgctcactgaaggcagggtaagttaaaatgggtaatcatctctga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgccactaccatcaatgctcactgaaggcagggtaagttaaaatgggtaatcatctctga 366

                                                                       
Query: 364 gctacctaaatattt-gtgattcatcacatttcttcatagtacttaaatctaaagattct 422
           |||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 gctacctaaaaattttgtgattcatcacgtttcttcatagtacttaaatctaaagattct 306

                                                                       
Query: 423 aatatgttacagaattttggggtagtcttgaatctctaatcagaactatgatgatatctg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatatgttacagaattttggggtagtcttgaatctctaatcagaactatgatgatatctg 246

                                                     
Query: 483 attaagtttacactgtttcccactgactaatataatatacac 524
           ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 245 attaagtttacactgtttcccactggctaatataatatacac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space:   470310
Effective search space used:   470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)