TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGACAGATATTCTTTTACTCAAAGAAAGAGATGCCAAAAAGCAG
AAAGCTTACATAATATGATGGAAGTTAAGCATCTAATGGATAGTAGGTGA
TATTCTAATCAAGCTCGGCTCCAAAGTACTTGTTTGTTTTCTGGGTTTGG
GTAAATTTGTTGCCTGTTGAGTGCTGGAATGCACAGCTGCACACTTGTCT
TTCTGCATAACGTTACACCATAATATTAATACTCTCCCTCAGTTTTAACA
ACACTCAGCCTTACACAGGTTGGTCTTTCATTTCCTACGTTTCAAATATA
GCATCAAAACATTTTCAACCCAGTGCCAGGCTCTGTAGGGGACACAAAAA
TAAGTGACCTGGAGGTTTTTAACCCTAAGAGATTCTATTTTAATACTGAA
GGAGTGAATTTAGTGTCTGGATACAAATCTATACTATAAAACAATAAAAG
GATATTGCTGAGCAAAACTCATGGTAGGAATTTCCAAAAAGGAACAGGTA
ACCCTGGAAGCTTTGCCTGAGCAGATCTTGATTGATATTGGTTTGTTTGT
TGTGGTGCTCACAGCATGTANGGAGCAGAAGAAAGGCTAATGACCACATC
TGAATAGCTTGCTGTCACTGCTATTTTGTGCCAACAGCTCATTTTTGGTG
AGAAATGATAATCAATGGGAGGAGGAGCCNAGCN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATTTGCAAGAGTAAGTCTCT
ATTTCCTGTGTCTTCTCTTGGGTTCTTTTCCTTCTGTTTGTTCTGTTCAG
TTCCAATGTGTGTGGTTTTGTTTTATGTTATTACATTGTATTATTATTCC
TTAGAAACCTGTTTGTTGTCTAATGAGAGACTGAAACAGAATAGATATAG
GTTAAATGGGAAAGGAGGTAAGAAGTAATTGGGAGGAGTGTGAGGGTGTG
GNNNAACNTCNTGNGANANNNNTTTTTTTTTCNNTANNATGAANAAAAAT
CATCTTAACAGTCACTTTTTGTGTCAACCACACATTGAAATGAGAATATT
TCATAATAAATATGTACTTTATTTCCCAAAAAGAAGGCTGCTATATTAAC
AATGAAATAATTAATGACTGATTATCATACAGATTGGATTACGAGTATCT
AGTTAGAGTTTATTTAGTTTTTACTCTTTCTTTTACTTTTTATTTTCTTC
TTCTAATCTCTTTATTTCCTTTCTTTTTCATTTTTTCTTTCTACTATTTT
TTTTTTTTTTTTACCTCTTACTTTCTTATTTATAATATTTATAATTTTCT
TCTTTCCATTTCTATTCCTTCATCATTCTTTTCTTTTTCTCTTTTTAATT
TTTCTTTATTTTCAAACTTTTCAAAACTCCGTATCTATTAGAGCTTTCCG

Query= MSMg01no340_m04.b1 MSMg01no340_m04.b1 CHROMAT_FILE:
MSMg01no340_m04.b1 PHD_FILE: MSMg01no340_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:50 2005
         (682 letters)



>mm_chr17_78537320_78538397
          Length = 1078

 Score = 1239 bits (641), Expect = 0.0
 Identities = 667/678 (98%), Gaps = 4/678 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagacagatattcttttactcaaagaaagagatgccaaaaagcagaaagcttac 64
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 878 gaattcaagacagaaattcttttactcaaataaagagatgccaaaaagcagaaagcttac 819

                                                                       
Query: 65  ataatatgatggaagttaagcatctaatggatagtaggtgatattctaatcaagctcggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ataatatgatggaagttaagcatctaatggatagtaggtgatattctaatcaagctcggc 759

                                                                       
Query: 125 tccaaagtacttgtttgttttctgggtttgggtaaatttgttgcctgttgagtgctggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tccaaagtacttgtttgttttctgggtttgggtaaatttgttgcctgttgagtgctggaa 699

                                                                       
Query: 185 tgcacagctgcacacttgtctttctgcataacgttacaccataatattaatactctccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgcacagctgcacacttgtctttctgcataacgttacaccataatattaatactctccct 639

                                                                       
Query: 245 cagttttaacaacactcagccttacacaggttggtctttcatttcctacgtttcaaatat 304
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 638 cagttttaacaacactcagccttacacaggttggtcttttgtttcctacgtttcaaatat 579

                                                                       
Query: 305 agcatcaaaacattttcaacccagtgccaggctctgtaggggacacaaaaataagtgacc 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agcatcaaaacatcttcaacccagtgccaggctctgtaggggacacaaaaataagtgacc 519

                                                                       
Query: 365 tggaggtttttaaccctaagagattctattttaatactgaaggagtgaatttagtgtctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tggaggtttttaaccctaagagattctattttaatactgaaggagtgaatttagtgtctg 459

                                                                       
Query: 425 gatacaaatctatactataaaacaataaaaggatattgctgagcaaaactcatggtagga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gatacaaatctatactataaaacaataaaaggatattgctgagcaaaactcatggtagga 399

                                                                       
Query: 485 atttccaaaaaggaacaggtaaccctggaagctttgcctgagcagatcttgattgatatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atttccaaaaaggaacaggtaaccctggaagctttgcctgagcagatcttgattgatatt 339

                                                                       
Query: 545 ggtttgtttgttgtggtgctcacagcatgtanggagcagaagaaaggctaatgaccacat 604
           |    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 338 g----gtttgttgtggtgctcacagcatgtagggagcagaagaaaggctaatgaccacat 283

                                                                       
Query: 605 ctgaatagcttgctgtcactgctattttgtgccaacagctcatttttggtgagaaatgat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 282 ctgaatagcttgctgtcactgctattttgtgccaacagctcatttttggtgagaagtgat 223

                             
Query: 665 aatcaatgggaggaggag 682
           ||||||||||||||||||
Sbjct: 222 aatcaatgggaggaggag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1078
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1068
Effective search space:   717696
Effective search space used:   717696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)