BAC Information

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BAC

Clone NameMSMg01-341N01
Chromosome17 (Build37)
Map Location 25,322,785 - 25,323,141
singlet/doubletsinglet
Overlap geneBC003965
Upstream geneTbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317
Downstream geneUnkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341N01.T7 (MSMg01no341_n01.b1)MSMg01-341N01.TJ (MSMg01no341_n01.g1)
ACCAG455517AG455518
length778776
length of high quality
(start - end)		358 (69 - 426)254 (76 - 329)
definitionCHROMAT_FILE: MSMg01no341_n01.b1 PHD_FILE: MSMg01no341_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:09 2005CHROMAT_FILE: MSMg01no341_n01.g1 PHD_FILE: MSMg01no341_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGATGTTCCGGGCTACATAAAGAAACCTTGTCTTGAAAAATTAG
AAAGGGGGAAGGAAAGAAAAAAAACGAGAAAGCAGAGGTGTAGTGAGTGT
CCCCACTTATTCTGCTCACGAGTTCAAATGCCCACATCACTTCAGATAAG
TTATCAGCCTGGCAGCACTGAGAACCCACTGCATGAAATGTAACATTTTT
TTTTTTTTTGCAAAAGCAATTCTATGTGAGCTGGAAACAGACCTCATTGG
TAGGATAGCACAATAGACTCCTGAGTTCAATCACAACACTGTGAAAAAGA
CAGAAACAAACAAACAAAAAAAACCAACCCACTATATTATTGATGTTTTG
TTTTGTTTGAGACAGGCCCTCCCTACGTAGTCCAAGTAGACCCCAAACTT
AGGATCCTCCTGCCTCAGTTTCATAAGTGTTGAGATGACAAGCATATCCT
ACCACTTCTGTCAAGCTTTTAAGTTCTCATGTGGGAACGAACATTTCCAC
TATCACCACATTTACTTTTCCATGTCTTCCCCAATTTATTTATTTTCCCG
CTATTTATACCTTTATCTTCCCGCTTGGTTTCTCTTTCCCCCGCTTTCTT
GTCCGTCTTCAATTTTATTTATGCCGTTATGCGCCTTTTCCTCTTATTCC
ACTTTCTCCCCCCCCTTTTTTACCATCCTTTATTTTTTTTCTCCCTTTCT
CCTCTCCTGCCCTTTTTTTTCCTTCCTN

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCAGAATGTCTTATTTAGGGTT
TCCATTGCTGTGAAAAGACACCATGACCACAACAACTCTTATAAAGGAAA
ACATTGAATTGGGGTGGGCTTACAGTTCAGATGTTTAGTCCATTATCGTC
ATGGCAGAAGGCATGGCAGCCTGGAGGTAGACATAGTGCTGGAGAGAGCT
GAGAGCTCTGCATCCCAATTAGTAGACAGCAGGAAGAGACTGCTAGGCAC
TAGGCCTGGCTTAAGCTTCTGAAACCTCATAGCGCTGCCTTCTACAAGGT
CATACTTCCTAAGAGGGCTCCTCCTTATGGGACTGTGTGGGAGTCATTTT
TATTCAAACCTTCCCCAGGAATATTATAGTATCTCCCGTCCCTTATGTGA
GACATGACTATTCAATTTTTAGACGCCTCTGACCCATTTCTCCTCGGATT
ACCTTTCCTCTTTCGCCCGCCCTTCTCTCCTTCCCCCGCTCATCTGACTT
TCCTTTCCCCTACGCTACTTTTCCCCACTATTTCCGTTACTTTTTTCTAC
CCCTATTTCTCCCCCCCCCTACCCTCCGTTTTTTTCTACTTCTTCCCCCT
TTTTTTTTTTTTTTTCCTTCTCCCCGCTCCCTCTTATTCTTTCTCACCCG
CCCCTACCTTTTTTATCTCCACCTTTTTCCTTCCCTGCATACCCCCCTGT
TTCTCTTCGCTTTTCTCTCTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_n01.b1 MSMg01no341_n01.b1 CHROMAT_FILE:
MSMg01no341_n01.b1 PHD_FILE: MSMg01no341_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:09 2005
         (358 letters)



>mm_chr17_25322585_25323341
          Length = 757

 Score =  685 bits (354), Expect = 0.0
 Identities = 357/358 (99%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacataaagaaaccttgtcttgaaaaattagaaagggggaaggaaagaaaaaaaacgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctacataaagaaaccttgtcttgaaaaattagaaagggggaaggaaagaaaaaaaacgag 498

                                                                       
Query: 61  aaagcagaggtgtagtgagtgtccccacttattctgctcacgagttcaaatgcccacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagcagaggtgtagtgagtgtccccacttattctgctcacgagttcaaatgcccacatc 438

                                                                       
Query: 121 acttcagataagttatcagcctggcagcactgagaacccactgcatgaaatgtaacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 acttcagataagttatcagcctggcagcactgagaacccactgcatgaaatgtaaca-tt 379

                                                                       
Query: 181 tttttttttttgcaaaagcaattctatgtgagctggaaacagacctcattggtaggatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttttttttttgcaaaagcaattctatgtgagctggaaacagacctcattggtaggatag 319

                                                                       
Query: 241 cacaatagactcctgagttcaatcacaacactgtgaaaaagacagaaacaaacaaacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacaatagactcctgagttcaatcacaacactgtgaaaaagacagaaacaaacaaacaaa 259

                                                                     
Query: 301 aaaaaccaacccactatattattgatgttttgttttgtttgagacaggccctccctac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaaaccaacccactatattattgatgttttgttttgtttgagacaggccctccctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space:   261052
Effective search space used:   261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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