BAC Information

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BAC

Clone NameMSMg01-342B05
Chromosome17 (Build37)
Map Location 21,691,373 - 21,691,899
singlet/doubletsinglet
Overlap geneZfp52
Upstream geneEG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508
Downstream geneBC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342B05.T7 (MSMg01no342_b05.b1)MSMg01-342B05.TJ (MSMg01no342_b05.g1)
ACCAG455714AG455715
length766725
length of high quality
(start - end)
273 (29 - 301)538 (61 - 598)
definitionCHROMAT_FILE: MSMg01no342_b05.b1 PHD_FILE: MSMg01no342_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:30 2005CHROMAT_FILE: MSMg01no342_b05.g1 PHD_FILE: MSMg01no342_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCCTGATTTTC
CATGACTTTTATCATGGAGGAGTGTTGGATTTTGTCAAATGATTTGTCAG
CATCTAATAAGATGATCATGTGATTTTTTTCTCTTTGAGTTTGTTTATAC
AGTGGACTACATTGATGGACTTCCATATATTAAACCATCCCTGCTATCCT
GGGATGAAGTCTACTTGGTCATGATGGATGATCATTTTGATGTATTCTTG
GATTCTGTTTATAAGGATTTTGTTGAGTATTTTTGCATCGATATTCATAA
TGTTTTATTGGTCTGAAGTTCTCTATATTTGTTGGGTTGTTATGTGGTTT
AGGTATCAGGATAACTGTGGCTTCTTATATTGAATTGTGTATAGTACCTT
CCGGTTTCTAATTTATGTAATATATTTTAGAAGAACTGTTACTACTTCTT
TTTATCAACGTTCTGATATAATTCCTTTTTTTATTCTTCCCTTCCATTGC
ACATTTCCTTCGCCTGTTTTTACTCTTATATTGACCCCCTTTTTATTCTT
TTCATTTTTTTTCTTCTCTGGTTTCTTTTCTTTATTTCTCCTCCACCCCT
CATACTCTCTCCTCCCCCTCTTTTTTCCTTTCCACTCTCTCTTTTTTTCC
CCCTTTTTTTTTTTTTTATTGATCGACTAACTACCCGCCCTATTCTATTT
TATTTTTATTTCCGCCCGTTAATACATTCCTTTTTTTTCTCGGCTCCTAT
CACTTTTACAGTCAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTAAAGAACAATGTCACACCACAAGAAAAGACCCAAGC
AATAGAAAAAAACCTCGACTCTGGTCAATGACCCAAAGCCAGGAGAGGAT
GGAAAGACATTTAAAACTTGGAGAGAAAAATCACCATTAACTATATATAC
TGTTACATCAGAAAAATACTCTTTCAAAACTAATGGAGACATATGTACAT
TTGAGGACAGTCATGAATTATCACAATTCATTTTACTAAAACAGCATAAC
CTATAATAAATTAGAGGCAAAACATACACAGAACAATTAGAGAAATTATC
TATGAGAACATAGGAAAGAATACATTTCATGTGAAAAAGAGGTAAGTACA
GGAAAACTGGGAAGTAATCATCCATGCTCAAGACGGCAAACCACTCTCAC
AGTAAAAAAAGAAGAATACTATGAATAATCCGGTCAACAACAATATAAAA
AGCAAAATCATAGGGAATAAAAATGCATGGCCAAAAAGCATAGCCATTCT
GGAAATCAATATAATCTGCAATTATAAAAATATCCTCAAGTTAAACAAAT
ATATCATGTGACCCAGCTATTCCACTCCTGGTAGAATATGCTCAAAGGAC
TCAACATCCTACGCCACAGATATGTGTTCAACCATGCCCATTGCTGCTAT
ATTCTTAACCCTTCCAAAAGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_b05.g1 MSMg01no342_b05.g1 CHROMAT_FILE:
MSMg01no342_b05.g1 PHD_FILE: MSMg01no342_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:30 2005
         (538 letters)



>mm_chr17_21691173_21692110
          Length = 938

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaaagaacaatgtcacaccacaagaaaagacccaagcaatagaaaaaaacctcgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttttaaagaacaatgtcacaccacaagaaaagacccaagcaatagaaaaaaacctcgact 668

                                                                       
Query: 61  ctggtcaatgacccaaagccaggagaggatggaaagacatttaaaacttggagagaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctggtcaatgacccaaagccaggagaggatggaaagacatttaaaacttggagagaaaaa 608

                                                                       
Query: 121 tcaccattaactatatatactgttacatcagaaaaatactctttcaaaactaatggagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tcaccattaactatatatactgttacatcagaaaaatactctttcaaaactaatggagac 548

                                                                       
Query: 181 atatgtacatttgaggacagtcatgaattatcacaattcattttactaaaacagcataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atatgtacatttgaggacagtcatgaattatcacaattcattttactaaaacagcataac 488

                                                                       
Query: 241 ctataataaattagaggcaaaacatacacagaacaattagagaaattatctatgagaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctataataaattagaggcaaaacatacacagaacaattagagaaattatctatgagaaca 428

                                                                       
Query: 301 taggaaagaatacatttcatgtgaaaaagaggtaagtacaggaaaactgggaagtaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taggaaagaatacatttcatgtgaaaaagaggtaagtacaggaaaactgggaagtaatca 368

                                                                       
Query: 361 tccatgctcaagacggcaaaccactctcacagtaaaaaaagaagaatactatgaataatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tccatgctcaagacggcaaaccactctcacagtaaaaaaagaagaatactatgaataatc 308

                                                                       
Query: 421 cggtcaacaacaatataaaaagcaaaatcatagggaataaaaatgcatggccaaaaagca 480
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 307 cggtcaacaacattataaaaaacaaaatcatagggaataaaaatgcatggccaaaaaaca 248

                                                          
Query: 481 tagccattctggaaatcaatataatctgcaattataaaaatatcctc 527
           |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 tagccattctggaaatcaatataatctgcaattaaaaaaatatcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)