BAC Information

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BAC

Clone NameMSMg01-342G22
Chromosome17 (Build37)
Map Location 57,761,426 - 57,761,729
singlet/doubletsinglet
Overlap genenone
Upstream geneLonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
Downstream geneCntnap5c, LOC674419, LOC620408, EG545216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342G22.T7 (MSMg01no342_g22.b1)MSMg01-342G22.TJ (MSMg01no342_g22.g1)
ACCAG455987AG455988
length740744
length of high quality
(start - end)		452 (58 - 509)439 (64 - 502)
definitionCHROMAT_FILE: MSMg01no342_g22.b1 PHD_FILE: MSMg01no342_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:57 2005CHROMAT_FILE: MSMg01no342_g22.g1 PHD_FILE: MSMg01no342_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCGCTATACGACTCACTATTTTCAGAGAATCCGCGGAATTCCACCTCTTT
CCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCA
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGAC
ATAGTACTACCAGAAGCTCCAGCAATACCTCTCCTGGGTGTATACCCAGA
AAATGTTCCAACTGGTAATAAGAACACATACTCTACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACTCAGATGTCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTC
AGCTATTTAAAAACAATGAATTCATACTCACTGATAAGTGAATATTAGCC
CCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAA
ACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCCTCTTAGAA
TTGGGAACAAACACCCATGGAAAGAGTTACAGAGAAAAAGTTTGTAGCTG
AAATGAAAGGATGTACCATGTATAGACCGCCCTTATCTTGGAATCCCCCC
ATAATCAGAATTCAAAAGTTGAAACCCTTTGTTACCCTATTAAGATTTTT
TTCCTAGGACCCCCAGGAGTTGGTTCCTTTGAAAATAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTCTCTCAGCTGTCAATACCTTTTGCAATTTGATTC
CCACCAACTTCCCATTCTTCCTTTCTCACAACTCCTGTTTTGTACTTTGG
ATTTGAGATAGTCTGAATTATGAATACTCACCATTCCCGGTACATATTAA
ATCTTGCTCACTCCCATTGTTCTGGCATCTGGCTGGAATTTCTTTTTAGT
GAGATAAGACAATTTTAAATTAACAGTGTGCAAAATGTTGAGATAATTTT
TATGAATATTAATTTCTATTCATAATGATGTATTTGATAAAAATGAAGGG
GTGTTTTGTCTTGTTTTGGTTTGGTTTCTTGTTCACTTGGGACTTCAATC
TAAACATTTGGTCCATTTCCATTTCAAAGGAAAGAAAGAAGCACTCAGAC
TTCATTATTCACTCCATCAGGTGTTAATAATACTATTTAAGGATCAGAGG
TTACTAAATTAACAAACACAGGTTTTTCAGAATCTGCTTACTCCATACAT
CAGTCCATTTCCAGGGTTAAGGACAATGGCTCCCTACAGAGACTCCCGGA
CAGATTTCTTTCTGTTTCTGGCCTTGGAATTTCTTTTTTGGCCCCAAATT
TTTTGTTCTCCCCTTTTTTTAAAACCAGAGGAGGGACGCCCCACTTTTCC
TTTGTAATTTCTGGCCCCAAACAATTATTTTCTTTGTTAAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_g22.g1 MSMg01no342_g22.g1 CHROMAT_FILE:
MSMg01no342_g22.g1 PHD_FILE: MSMg01no342_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:57 2005
         (439 letters)



>mm_chr17_57761091_57761929
          Length = 839

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 136 aaatcttgctcactcccattgttctggcatctggctggaatttctttttagtgagataag 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaatcttgctcactcccattgttctggcatctggctggaatttctttttagtgagataag 580

                                                                       
Query: 196 acaattttaaattaacagtgtgcaaaatgttgagataatttttatgaatattaatttcta 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acaattttaaattaacagtgtgcaaaatgttgagataatttttatgaatattaatttcta 520

                                                                       
Query: 256 ttcataatgatgtatttgataaaaatgaaggggtgttttgtcttgttttggtttggtttc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttcataatgatgtatttgataaaaatgaaggggtgttttgtcttgttttggtttggtttc 460

                                                                       
Query: 316 ttgttcacttgggacttcaatctaaacatttggtccatttccatttcaaaggaaagaaag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttgttcacttgggacttcaatctaaacatttggtccatttccatttcaaaggaaagaaag 400

                                                                       
Query: 376 aagcactcagacttcattattcactccatcaggtgttaataatactatttaaggatcaga 435
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aagcacgcagacttcattattcactccatcaggtgttaataatactatttaaggatcaga 340

               
Query: 436 ggtt 439
           ||||
Sbjct: 339 ggtt 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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