Query= MSMg01no343_m13.b1 MSMg01no343_m13.b1 CHROMAT_FILE:
MSMg01no343_m13.b1 PHD_FILE: MSMg01no343_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:44 2005
(481 letters)
>mm_chr17_90361246_90362126
Length = 881
Score = 801 bits (414), Expect = 0.0
Identities = 462/482 (95%), Gaps = 8/482 (1%)
Strand = Plus / Plus
Query: 4 aaagcaatagcaacatcaatatatatcacccctccttttgctttgagttcatcaggattg 63
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 aaagcaatagcaacatcaatatatatcgcccctccttttgctttgagttcatcaggattg 263
Query: 64 cacatactcccattattttatgtcaccatgacaacctcagagcagagataatgtcaccat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacatactcccattattttatgtcaccatgacaacctcagagcagagataatgtcaccat 323
Query: 124 gccctcaataattttcactccttaaacaacttaaccttgtgtgtttcattattgtaaaat 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 gccctcaataattttcactccttaaactacttaaccttgtgtgtttcattattgtaaaat 383
Query: 184 gaatgggctcatgcagtcaatatgtaatttactttttcatgtaacttacagtgccttata 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaatgggctcatgcagttaatatgtaatttactttttcatgtaacttacagtgccttata 443
Query: 244 gacttgcacttttcag----tcttgaatatagcatatccatgctaactttgagtcaatta 299
||||||||| ||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 gacttgcac----cagccagtcttgaatatagcatatccatgctaactttgagtcattta 499
Query: 300 tattacaaaagctcccagtttataatgagtagcccaagttcatagcttctaagtaccaat 359
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 500 tattacaaaagctcccggtttataatgaatagcccaagttcatagcttctcagtaccaat 559
Query: 360 gatcaggcattcagcctctactggggcctattgagatgaaggaagaggtcagaaaagctc 419
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 560 gttcaggcattcagcctctactggggcctattgagatgaaggaaggggtcataaaagctc 619
Query: 420 atgcccataatttctggactttggaaactgaggaaagggaatttccagattattctatat 479
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 620 atgcccgtaatttctggactttggaaactgaggaaagggagtttccagattattctatat 679
Query: 480 aa 481
||
Sbjct: 680 aa 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_m13.g1 MSMg01no343_m13.g1 CHROMAT_FILE:
MSMg01no343_m13.g1 PHD_FILE: MSMg01no343_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:45 2005
(398 letters)
>mm_chr17_90446055_90446852
Length = 798
Score = 735 bits (380), Expect = 0.0
Identities = 395/402 (98%), Gaps = 4/402 (0%)
Strand = Plus / Minus
Query: 1 gccagaccctacatgtatgcatacctacttacacacacacacaaacacacactcactcac 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gccagaccctccatgtatgcatacctacttacacacacacacaaacacacactcactcac 677
Query: 61 acagattcacacacatacacacatagactcatatacatcacaaac----agattcacaca 116
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 676 acagattcacacacatacacacatagactcacatacatcacaaacacatagattcacaca 617
Query: 117 tagacacatacacacacattcattgtcagattccctcagaagaatatggaaatctacaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tagacacatacacacacattcattgtcagattccctcagaagaatatggaaatctacaat 557
Query: 177 attagtgccagtgctttgcccacttgcttaactcaaagctttgaaatgaaaaatatttca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 attagtgccagtgctttgcccacttgcttaactcaaagctttgaaatgaaaaatatttca 497
Query: 237 catttccttaatggtaatattcaccatacttcattcccagacattgaccaacttacaaca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 catttccttaatggtaatattcaccatacttcattcccagacattgaccaacttacaaca 437
Query: 297 atctcttcccataatctgatagaaaacatccatccttttcagcaggtgtgctcagtctcc 356
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atttcttcccataatctgatagaaaacatccatccttttcagcaggtgtgctcagtctcc 377
Query: 357 tgtagaaggtggaaagtagatggaatactaagaattagagta 398
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgtagaaggtggaaagtagatggaatactaagaattagagta 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
