BAC Information

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BAC

Clone NameMSMg01-344D12
Chromosome17 (Build37)
Map Location 44,324,334 - 44,324,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4
Downstream geneClic5, Runx2, Supt3h, 4930564C03Rik, EG210562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344D12.T7 (MSMg01no344_d12.b1)MSMg01-344D12.TJ (MSMg01no344_d12.g1)
ACCAG457336AG457337
length874748
length of high quality
(start - end)		39 (79 - 117)506 (69 - 574)
definitionCHROMAT_FILE: MSMg01no344_d12.b1 PHD_FILE: MSMg01no344_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:20 2005CHROMAT_FILE: MSMg01no344_d12.g1 PHD_FILE: MSMg01no344_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTACCAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTTTAGCTTTGTGAGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTCTGTATCTAAAACATAAAACAAACACCATACAAT
ATATTTTTATCACTATTATTCTTTTTCACCCTCTCTATCCCCTCCAATAA
CACACCAAACTCACATTAACTTACAACATCCCACAATCACACTTTCACTT
TCTACTTTCTTACTCCCAACATTATCTATCTATAACACCAAATAATAATA
TTTCTAAAAAACACCAACTTCCTTTTTATTATAAACACCAACCTCCATTT
TCTTCTTCCCTCCTTTTTTTCCCTTTTATCACACCTCTATTTTATCCCAT
ATATCTAATATCAAATATTAAATTTATTTACCCCCCCTACACAAAAATAA
ATATAAAATATAAATAAAAAAAAATATCCATTACAATACATTAATAATAC
CTATACTCCACTATTAAACCTTCCACTATACTTTATAAAATCTAAATACA
TATAAATTAACATACAAAAAAATATAATCTATTCATAAACCTTACACCAC
ATAAAACAACTAAATTATTCTCAAAATATTATTATAATACCCATCATCTT
ACTTTATCATTATTTAACTATTCTTATATAACCAAATCTTACCNAATCTC
ATTCCATCATCATATATAATTTTTCATTAAAATAAACATATACCATACAT
AACAATAACAAAAACATCAATAACCCCTCTAAAATTACACCCTTTATCCA
TAAATCTAAATATATAACCAATAAAATCCAACTACATAATAATCCTTCCT
ATTAACTCTTTCTAAAAATAAAAN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCATTCTCCTATCTCAAAACCTTCTAAGTGC
TGCTTACAGGTGTAGGTCACCACATCCAGCTTTCTCTTTCTCTTTCTCTT
TCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC
TCTTTCTCTTTCTCTTTCTCTCTCTCTCTCTTTCTCTTTCTCTTTCTTTC
TCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTC
TTCCTCTTCCTCTTCCTCTTTCTTTCTCTTTCTCTTTCTCTTCCTCTTCC
TCTTCCTCTTTCTCTTTCTCTTCCTCTTCCTCTTACCCTTTCTTCCTTTC
TTTCCTTCTTTCTTTCAGAACTATGATACAGATATACTGTGCTCACATCC
TGTAAGCATAGCTCAATGTATTTTCACCAGCTGCTACCAGCACTAGATGA
AGGAATAAAATATTGACTTCTTGCTCTTTTTTTTTTCTTCTGCTTTTCCA
CTCACCCAAGGTAACCATGACTCAGACTTGAAATAGTCTAAAGTGAGAGT
TAGGGTTGGTAGGTTGAAGCTACTAACGCTGGTTTCTTTTCAACATAATG
TGATTGGACACATTTCCCATAAATATAGACTTTGGGAGAGGGGGGGGTAA
ATACGGAATAATAAAAGGTTCCTGAAAAAAAATCTCCCATGCGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_d12.g1 MSMg01no344_d12.g1 CHROMAT_FILE:
MSMg01no344_d12.g1 PHD_FILE: MSMg01no344_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:20 2005
         (506 letters)



>mm_chr17_44323798_44324703
          Length = 906

 Score =  516 bits (267), Expect = e-150
 Identities = 323/345 (93%), Gaps = 10/345 (2%)
 Strand = Plus / Minus

                                                                       
Query: 168 ctttctctt--tctttctcttcctcttcctcttcctcttcctcttcctcttcctcttcct 225
           |||||||||  |||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 877 ctttctctttctctttctctttctctttctctttctctttctctttctctttctctttct 818

                                                                       
Query: 226 cttcctcttcctcttcctcttcctctttctttctctttctctttctcttcctcttcctc- 284
           ||| ||||| ||||| |||||  ||  |||||||||||||||| ||||||||||||||| 
Sbjct: 817 ctttctctttctctttctctt--tc--tctttctctttctcttcctcttcctcttcctct 762

                                                                       
Query: 285 ttc---ctctttctctttctcttcctcttcctcttaccctttcttcctttctttccttct 341
           |||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 761 ttctttctctttctctttctcttcctcttcctctttccctttcttcctttctttccttct 702

                                                                       
Query: 342 ttctttcagaactatgatacagatatactgtgctcacatcctgtaagcatagctcaatgt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttctttcagaactatgatacagatatactgtgctcacatcctgtaagcatagctcaatgt 642

                                                                       
Query: 402 attttcaccagctgctaccagcactagatgaaggaataaaatattgacttcttgctcttt 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 attttcaccagctgctaccagcactagatgaaggaataaaatattgacttcttgctcttt 582

                                                        
Query: 462 tttttttcttctgcttttccactcacccaaggtaaccatgactca 506
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tttttttcttctgcttttccactcacccaaggtaaccatgactca 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 114
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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