BAC Information

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BAC

Clone NameMSMg01-344L07
Chromosome17 (Build37)
Map Location 32,361,526 - 32,534,732
singlet/doubletdoublet
Overlap geneBrd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik
Upstream geneUbash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9
Downstream genePglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344L07.T7 (MSMg01no344_l07.b1)MSMg01-344L07.TJ (MSMg01no344_l07.g1)
ACCAG457706AG457707
length770728
length of high quality
(start - end)		439 (43 - 481)465 (78 - 542)
definitionCHROMAT_FILE: MSMg01no344_l07.b1 PHD_FILE: MSMg01no344_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:58 2005CHROMAT_FILE: MSMg01no344_l07.g1 PHD_FILE: MSMg01no344_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,361,526 - 32,361,960)(32,534,268 - 32,534,732)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTAGATTTCCTCAAATTACACAGCATTTTTTCTGGTGATGAATATTT
TTTAGGGTTCCAACAGTGCTCCCTAATGTACCCCAATGGCAGCTCAGTGA
GGTTTGAACAAAGCCCTTATCACATTGCCTTATGAATCCCCACTCTGTCA
CCATGTCCAGAACATGCTGTCCCCGTTCAGCTCTAAACTGAGGGCCTAGT
CTGTACATTTTAATTTCCACCTAAGTGGTGAGAACTAAGGCTTTACAAAA
CACAGTAAACTTCAAGAAACTCACCTACCCATCTCTTCTGGGCAATTTTA
CCCACTACACGAGCAGAGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCT
CCAGAGTCGTTCTATTTGAAAGGGTTGGTTTTAATCACATCTGTGGTCTG
AACTGTAAACAAATGATCTGGCTTCATGGCACAGCCGAGCCGAAAGGNTT
GGCTACGGTGTTAGGAAGTGGCCCGTGGGTCCATATGTAAAACCAGGAAG
AACCTGGATTTTAATGGCCATGTCCTCACTTTCCTGAAAATTGGTGATCC
CAACACATTTTTGTTTTCAGCAATATATTCCCCTCTGGTTCTCTCTTTTA
TTTTAAGTTTTGTGCTCGGAACATTACCCCCTGACTAATTATAACACCTG
TGGCGTGACTCCTTTTATCCCATTATATTTAACCCCTCCCACATATCATC
ATTCCTTCGTCTCCTTTTGT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAATGCATGGAAATTCAGC
CATAAGGGTTGGAGGTGGGGGAAGGAAACAGCGGATCAATCACTAGGATG
CTGAAAGGAGACAGCAGCTAGGGTAACTAAAGATTAGAAAGCTAAGGCCT
AAGTGAGTGAGGAATAACGCCTTGTTCCCCTTCACTGGCCCCAGACCTCC
CAGTGCCCTCGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACC
TAGGTGCTGAGAGGGACGTGAGAGTCTGGCCACTGCATCCTAGCCTCTTG
GGGGAGCCCTACTGCTTCCAGGTAAATAAGGAACCCACCTTAGCCTCTGC
TAAACCCTTGGCACCATCTCACCCTCTATTTAACCACTGAATCCCGCCTC
AAATAGGTAACCTGGGCAGGCGGCAGCCTCTGTTTCTCATGTCGCTCGAG
CGCTGAGAGAGACCGTTGGATTGAGGACCTTCGTCGGCAGTTCCAGCCGA
TCCAGGTCTTTGAGGGGGACTGACTCAGAAAGTCCTTTCTCTATTCATGC
CCTGACCCTTCCACGTTATCCTATCAGTTTGTCCCCTATTTCTCCCGCGT
CATTCATACCCCATCCCTATTAATGTCATACCCGCCCTTGCTTTGCTTTC
CCCCCATTTGCTCCCTTAATTCTGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_l07.b1 MSMg01no344_l07.b1 CHROMAT_FILE:
MSMg01no344_l07.b1 PHD_FILE: MSMg01no344_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:58 2005
         (439 letters)



>mm_chr17_32361322_32362160
          Length = 839

 Score =  818 bits (423), Expect = 0.0
 Identities = 432/435 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagatttcctcaaattacacagcattttttctggtgatgaatattttttagg 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagaactactcaaattacacagcattttttctggtgatgaatattttttagg 264

                                                                       
Query: 65  gttccaacagtgctccctaatgtaccccaatggcagctcagtgaggtttgaacaaagccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttccaacagtgctccctaatgtaccccaatggcagctcagtgaggtttgaacaaagccc 324

                                                                       
Query: 125 ttatcacattgccttatgaatccccactctgtcaccatgtccagaacatgctgtccccgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatcacattgccttatgaatccccactctgtcaccatgtccagaacatgctgtccccgt 384

                                                                       
Query: 185 tcagctctaaactgagggcctagtctgtacattttaatttccacctaagtggtgagaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagctctaaactgagggcctagtctgtacattttaatttccacctaagtggtgagaact 444

                                                                       
Query: 245 aaggctttacaaaacacagtaaacttcaagaaactcacctacccatctcttctgggcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggctttacaaaacacagtaaacttcaagaaactcacctacccatctcttctgggcaat 504

                                                                       
Query: 305 tttacccactacacgagcagaggtcaaaagctgagttctgtatagtgtctccctccagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttacccactacacgagcagaggtcaaaagctgagttctgtatagtgtctccctccagag 564

                                                                       
Query: 365 tcgttctatttgaaagggttggttttaatcacatctgtggtctgaactgtaaacaaatga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcgttctatttgaaagggttggttttaatcacatctgtggtctgaactgtaaacaaatga 624

                          
Query: 425 tctggcttcatggca 439
           |||||||||||||||
Sbjct: 625 tctggcttcatggca 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_l07.g1 MSMg01no344_l07.g1 CHROMAT_FILE:
MSMg01no344_l07.g1 PHD_FILE: MSMg01no344_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:58 2005
         (465 letters)



>mm_chr17_32534068_32534932
          Length = 865

 Score =  861 bits (445), Expect = 0.0
 Identities = 460/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagaatgcatggaaattcagccataagggttggaggtgggggaaggaaacagcggatc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 665 caaagaatgcatggaaattcagccataagggatggaggtgggggaaggaaatagcggatc 606

                                                                       
Query: 61  aatcactaggatgctgaaaggagacagcagctagggtaactaaagattagaaagctaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aatcactaggatgctgaaaggagacagcagctagggtaactaaagattagaaagctaagg 546

                                                                       
Query: 121 cctaagtgagtgaggaataacgccttgttccccttcactggccccagacctcccagtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cctaagtgagtgaggaataacgccttgttccccttcactggccccagacctcccagtgcc 486

                                                                       
Query: 181 ctcggttccagagaatcgctggccacactctctgagctggacctaggtgctgagagggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctcggttccagagaatcgctggccacactctctgagctggacctaggtgctgagagggac 426

                                                                       
Query: 241 gtgagagtctggccactgcatcctagcctcttgggggagccctactgcttccaggtaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgagagtctggccactgcatcctagcctcttgggggagccctactgcttccaggtaaat 366

                                                                       
Query: 301 aaggaacccaccttagcctctgctaaacccttggcaccatctcaccctctatttaaccac 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 365 aaggaacccaccttagcctctgctaaacccttggcaccatctcagcctctatttaaccac 306

                                                                       
Query: 361 tgaatcccgcctcaaataggtaacctgggcaggcggcagcctctgtttctcatgtcgctc 420
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 305 tgaatcccgcctcaaataggtaacctgggcaggtgggagcctctgtttctcatgtcgctc 246

                                                        
Query: 421 gagcgctgagagagaccgttggattgaggaccttcgtcggcagtt 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagcgctgagagagaccgttggattgaggaccttcgtcggcagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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