Query= MSMg01no349_c16.b1 MSMg01no349_c16.b1 CHROMAT_FILE:
MSMg01no349_c16.b1 PHD_FILE: MSMg01no349_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:42 2005
(635 letters)
>mm_chr17_11492106_11493140
Length = 1035
Score = 959 bits (496), Expect = 0.0
Identities = 555/584 (95%), Gaps = 18/584 (3%)
Strand = Plus / Minus
Query: 55 ctaagataacaaaagtgttgggactttgtattgtcacttctgaacaactgtgttggtccc 114
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ctaagataacaaaagtattgggactttgtattgtcacttctgaacaactgtgttggtccc 976
Query: 115 aagccatagaactggcccaggtgtctcagcatgggatgtccttcttcacagcctttggcc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 aagccatagaactggcccaggtgtctcagcatgggatgtccttcttcacagcctttggcc 916
Query: 175 agcttcttccacactatctggcacttggtagttatggctccttctctcttgcccacttct 234
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 915 agcttcttccacactatctggcacttggtagttatggcttcttctctcttgcccacttct 856
Query: 235 gcct---agagccttatggctgtttcttaaaaatcatctgaagagttattagcatttccc 291
| || |||| |||| | ||| |||||||||||||||||||||| ||
Sbjct: 855 gtctagaagag--ttat-----tatct--------atctgaagagttattagcattttcc 811
Query: 292 agctattatctgcaagcctgctctatttgccatatcctctaaccacatagggagtagact 351
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agctattatctgcaaacctgctctatttgccatatcctctaaccacatagggagtagact 751
Query: 352 cagtccttgacaatccctacaagtctctttcagaccataccaatggaaaaacatccttaa 411
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cggtccttgacaatccctacaagtctctttcagaccataccaatggaaaaacatccttaa 691
Query: 412 gccatgtcagggatccaggcacagataacgggacagcatcagggatcttgatggacaggg 471
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 690 gccatgtcagggatccaggcacagataaagggagagcatcagggatcttgatggacaggg 631
Query: 472 ctgggtggtagtccctcagaaaaggcttgaccacagtttttgagtatatgtctcataaac 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctgggtggtagtccctcagaaaaggcttgaccacagtttttgagtatatgtctcataaac 571
Query: 532 caggcctaaaactatgcaacatgatcaaaattagtactaccactgaagcctggcataaat 591
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 570 caggcctaaaactatgaaacatgatcaaaattcgtactaccactgaagcctggcataaat 511
Query: 592 ctccatacgtaatatggagagagaattatttttccctatactga 635
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctccatacgtaatatggagagagaattatttttccctatactga 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_c16.g1 MSMg01no349_c16.g1 CHROMAT_FILE:
MSMg01no349_c16.g1 PHD_FILE: MSMg01no349_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:42 2005
(462 letters)
>mm_chr17_11284559_11285420
Length = 862
Score = 876 bits (453), Expect = 0.0
Identities = 458/460 (99%)
Strand = Plus / Plus
Query: 1 tgatccttggttaagttcctttatggattttttgttgccaaatttatgatattttttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatccttggttaagttcctttatggattttttgttgccaaatttatgatattttttcat 260
Query: 61 aaataagtgaaatttaaatgcttaagatatttaaaatggattgttaaataatgctatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataagtgaaatttaaatgcttaagatatttaaaatggattgttaaataatgctatgtc 320
Query: 121 attatttctgcaatttgtcatgcacattgcacagttgacacctgtcatgtccaacagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatttctgcaatttgtcatgcacattgcacagttgacacctgtcatgtccaacagcat 380
Query: 181 tgcagctgttcttggggtagaagagaaaacccaacatctgttgtatgatgttaagcttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagctgttcttggggtagaagagaaaacccaacatctgttgtatgatgttaagcttaa 440
Query: 241 tttaaaacatgcttgtttcctttatagctgtgtttagctggtctgtatttgtacagaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaacatgcttgtttcctttatagctgtgtttagctggtctgtatttgtacagaaag 500
Query: 301 gcagtttggtggtgattggtagtccctcctaaacaagagatgcactttttcttgcttccc 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagcttggtggtgattggtagtccctcctaaacaagagatgcactttttcttgcttccc 560
Query: 361 ctttccttgaggcatttctctcccttaattaaccctagcatctcctaatgtaacattcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttccttgaggcatttctctcccttaattaaccctagcatctcctaatgtaacattcat 620
Query: 421 gttcatcctggaacaggttttttgtttttttgnttttttt 460
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gttcatcctggaacaggttttttgtttttttggttttttt 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
